Transcript Information: R_Transcript_43974.p1


Annotated TAIR IDAT4G15093.1
Annotated Gene Namecatalytic LigB subunit of aromatic ring-opening dioxygenase family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:8618454-8619472 | Forward length=269
E-Value9.3E-120
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.040739195937
Replicate 215.074266965547
Replicate 314.977482274407
Condition 2: 8 Hour
Replicate 114.204940882857
Replicate 217.8457037771
Replicate 316.11537224951
Condition 3: 24 Hour
Replicate 112.803392492373
Replicate 214.491436130027
Replicate 315.784402418436


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43974.p1 GENE.R_Transcript_43974~~R_Transcript_43974.p1 ORF type:complete len:312 (+),score=57.93,LigB|PF02900.14|4.1e-57 R_Transcript_43974:261-1196(+)
ATGCCTAAAATTGCCTTCAAAAAACAACTACTACAATTCCTTATAGCTTTACCTTTACTCTATTTTTCTTGCAACAATTTTCTCAAATCAAACCCCATTCCCAGCTCCAAGAAAACAGAGATAAACATGAGTTCAGGAGCAGTAAAAGAGACTTTCTACATATCACACGGATCACCAATGCTTTCAGTGGATGAATCATTACCAGCGAGGCGTTTCTTGAAGGGTTGGAGAGATGAAAACTTCACCACCCAAAAACCCAAATCAATTCTTGTCATTTCTGGTCACTGGGAAACTGATGAACCTACCCTTACAGCTGTTGACCGTTGTGATACCATCTATGATTTTTATGGCTTTCCTTCCCCTTTGTACAAGCTCAAGTATCCTGCTCCTGGTGCTCCAGAGTTAGCAAAGCGAGCACAAGAACTTCTCTCGAGCTCTGGGTTCAAGCATGTGCGTTTGAACAAAAGACGTGGGCTTGATCATGGTGCTTGGGTGCCTCTCATGCTCATGTATCCCGAGGCTGACATCCCCATTTGTCAGCTCTCCATCCAAATGCACAAGGATGCAAGGCACCATTATATGATGGGACAAGCATTGGCCCCTCTCAAGGATGAAGGTGTCCTCATCATTGGTTCTGGAAGTGCCACACACAATTTGAGAACCCTTAACTTCAATGCTGACGAAGTTTCCCCTTGGGCTGTGGAGTTTGATAAGTGGCTAGAAGAAGCCCTGACGAGTGGAAGGTATGAGGACGTGAATGACTTTGAAAAGAAAGCACCTCATGCAAGGAAGAATCACCCAACGCCAGATCACTTCTACCCCTTGCACGTAGCAATGGGTGCTGCTGGTGAAAACTCAAAGGCGGAGCTAATTCACCGTAGTTGGAGCCTTGGCACTCTATCCTATGCCTCCTACAAGTTTGCCATCCCCAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43974.p1 GENE.R_Transcript_43974~~R_Transcript_43974.p1 ORF type:complete len:312 (+),score=57.93,LigB|PF02900.14|4.1e-57 R_Transcript_43974:261-1196(+)
MPKIAFKKQLLQFLIALPLLYFSCNNFLKSNPIPSSKKTEINMSSGAVKETFYISHGSPMLSVDESLPARRFLKGWRDENFTTQKPKSILVISGHWETDEPTLTAVDRCDTIYDFYGFPSPLYKLKYPAPGAPELAKRAQELLSSSGFKHVRLNKRRGLDHGAWVPLMLMYPEADIPICQLSIQMHKDARHHYMMGQALAPLKDEGVLIIGSGSATHNLRTLNFNADEVSPWAVEFDKWLEEALTSGRYEDVNDFEKKAPHARKNHPTPDHFYPLHVAMGAAGENSKAELIHRSWSLGTLSYASYKFAIPN*

Click here to download the sequence:
Link to NCBI Protein BLAST