Transcript Information: R_Transcript_43977.p1


Annotated TAIR IDAT4G15093.1
Annotated Gene Namecatalytic LigB subunit of aromatic ring-opening dioxygenase family
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:8618454-8619472 | Forward length=269
E-Value4.6E-118
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.455708396107
Replicate 213.257279429521
Replicate 316.005348705004
Condition 2: 8 Hour
Replicate 112.321412809992
Replicate 215.122263040033
Replicate 315.824481053671
Condition 3: 24 Hour
Replicate 116.850441843411
Replicate 211.593148904021
Replicate 313.118592232211


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_43977.p1 GENE.R_Transcript_43977~~R_Transcript_43977.p1 ORF type:complete len:312 (+),score=55.54,LigB|PF02900.14|1e-57 R_Transcript_43977:261-1196(+)
ATGCCTAAAATTGCCTTCAAAAAACAACTACTACAATTCCTTATAGCTTTACCTTTACTCTATTTTTCTTGCAACAATTTTCTCAAATCAAACCCCATTCCCAGCTCCAAGAAAACAGAGAGAAACATGAGTTCAGGAGCAATAAAGGAGACTTTCTACATATCACACGGATCACCAATGCTTTCAGTGGATGAATCATTACCAGCAAGGCATTTCTTGAAGAGTTGGAGAGATAAAAACTTCACCACCCAAATGCCCAATTCAATTCTTATCATTTCTGGTCACTGGGAAACTGATGAACCTACCCTTACAGCTGTTGACCGTTGTGATACCATCTATGATTTTTATGGCTTTCCTTCCCCTTTGTACAAGCTCAAGTATCCTGCTCCTGGTGCTCCAGAGTTAGCAAAGCGAGCACAAGAACTTCTCTCGAGCTCTGGGTTCAAGCATGTGCGTTTGAACAAAAGACGTGGGCTTGATCATGGTGCTTGGGTGCCTCTCATGCTCATGTATCCCGAGGCTGACATCCCCATTTGTCAGCTCTCCATCCAAATGCACAAGGATGCAAGGCACCATTATATGATGGGACAAGCATTGGCCCCTCTCAAGGATGAAGGTGTCCTCATCATCGGTTCTGGAAGTGCCACGCACAATTTGAGAGCCCTTAACTTTGATGCTGAAGAAGTTGTCCCTTGGGCTGCGGAGTTTGATAAGTGGCTAGAAGAAGCCCTGACGAGTGGAAGGTATGAGGACGTGAATGACTTTGAAAAGAAAGCACCTCATGCAAGGAAGAATCACCCAACGCCAGATCACTTCTACCCATTGCACGTAGCAATGGGTGCCGCTGGTGAAGACTCAAAGGCGGAGCTAATTCACCGCAGCTGGAGCCTTGGCAGTTTATCCTATGCCTCTTACAAGTTTGCCACCCCCAATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_43977.p1 GENE.R_Transcript_43977~~R_Transcript_43977.p1 ORF type:complete len:312 (+),score=55.54,LigB|PF02900.14|1e-57 R_Transcript_43977:261-1196(+)
MPKIAFKKQLLQFLIALPLLYFSCNNFLKSNPIPSSKKTERNMSSGAIKETFYISHGSPMLSVDESLPARHFLKSWRDKNFTTQMPNSILIISGHWETDEPTLTAVDRCDTIYDFYGFPSPLYKLKYPAPGAPELAKRAQELLSSSGFKHVRLNKRRGLDHGAWVPLMLMYPEADIPICQLSIQMHKDARHHYMMGQALAPLKDEGVLIIGSGSATHNLRALNFDAEEVVPWAAEFDKWLEEALTSGRYEDVNDFEKKAPHARKNHPTPDHFYPLHVAMGAAGEDSKAELIHRSWSLGSLSYASYKFATPN*

Click here to download the sequence:
Link to NCBI Protein BLAST