Transcript Information: R_Transcript_44123.p2


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value3E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 132.956735057131
Replicate 222.891799759436
Replicate 329.26972026175
Condition 2: 8 Hour
Replicate 126.86643515045
Replicate 232.299051548379
Replicate 342.857969520358
Condition 3: 24 Hour
Replicate 138.263012046174
Replicate 231.398111615058
Replicate 339.063472948143


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44123.p2 GENE.R_Transcript_44123~~R_Transcript_44123.p2 ORF type:3prime_partial len:144 (+),score=33.91,RRM_1|PF00076.18|7.5e+02,RRM_1|PF00076.18|1.3e-22,RRM_6|PF14259.2|1.7e-13 R_Transcript_44123:2196-2624(+)
ATGAGATGCAGGTATATTGAATTTTATGATGCGATGTCTGTGCCAATGGCGATTGCTCTCTCCGGTCAACTACTTCTAGGGCAGCCAGTGATGGTTAAACCATCTGAAGCTGAAAAGAACCTTGTCCAGTCAACAGCTTCCACTGGCTCAAGTGTGACAGGCCCATATGGACCAACTGATAGGAAGTTGTATGTTGGTAATTTGCATTTCAACATGACAGAGCAACAGCTACGTCAGATCTTTGAGCCTTTTGGTCCCGTGGAGCTGGTGCAGCTACCCCTTGACCTGGAGACAGGACACTGCAAAGGTTTTGGGTTTGTTCAATTCGCTCAAGTTGAACATGCAAAGGCAGCTCAGAGTTTGAATGGTAAATTGGAAATTGCTGGTAGATATATTAAGGTTTCTTCGGTCACTGAACATGTTGGCGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44123.p2 GENE.R_Transcript_44123~~R_Transcript_44123.p2 ORF type:3prime_partial len:144 (+),score=33.91,RRM_1|PF00076.18|7.5e+02,RRM_1|PF00076.18|1.3e-22,RRM_6|PF14259.2|1.7e-13 R_Transcript_44123:2196-2624(+)
MRCRYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGSSVTGPYGPTDRKLYVGNLHFNMTEQQLRQIFEPFGPVELVQLPLDLETGHCKGFGFVQFAQVEHAKAAQSLNGKLEIAGRYIKVSSVTEHVGG

Click here to download the sequence:
Link to NCBI Protein BLAST