Transcript Information: R_Transcript_44129.p1


Annotated TAIR IDAT5G09880.1
Annotated Gene NameSplicing factor, CC1-like
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3081646-3085179 | Reverse length=527
E-Value6E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.558301294211
Replicate 27.371741838951
Replicate 38.6887625364716
Condition 2: 8 Hour
Replicate 114.507299294763
Replicate 212.547328682045
Replicate 314.965120981698
Condition 3: 24 Hour
Replicate 118.855628506766
Replicate 213.827748520738
Replicate 316.055557670013


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44129.p1 GENE.R_Transcript_44129~~R_Transcript_44129.p1 ORF type:3prime_partial len:319 (+),score=107.82,RRM_1|PF00076.18|5.2e+03,RRM_1|PF00076.18|4.7e-11,RRM_1|PF00076.18|5.6e-09,RRM_6|PF14259.2|3e-05,RRM_6|PF14259.2|0.00029,MIP-T3|PF10243.5|6.5e-07 R_Transcript_44129:374-1327(+)
ATGGATTTCGACGAGTACGAGTACTTAGAGAAGGCAGTGGAGGATCCAATTCTAGACTCGAAATCGAAGTCGAAATCGAAATCGAGCAAAGAAAGCAGCGAGAAGAGAGAGAGAGGCTATCGAAAGAACGATAATGAAGGAGAAGAGGAAGAGAGGAGAAGGAAGAAATCGAGGAGCGAAGAGGAGAATGGCGGAGGAGAGAGAAGGAGAGAGGAGAGAGAGAGGTCTGAGAGGAGGAGAGAGAAAGAGGATAGACACAGAAGTGGTGATAGGGATGGAGATAGGAGAGATAGGGATAGGGAGAGAGAGAAGGAGAGAGAGAGGAGGGAGAGGAGGGAAAGAGAGAAGGAGAAGGAGAGAGAAAGAGAGCGGTCGAGGCGGAGCAGCAGTCGGTCCAGGCGTCATGATAGCCGGGAGAGAGAGAGGGAGAGGGAGAGAGAGAGGGAGAGAGAGTTGAGAGAGCTTGAGAGTAGGGAGAGCAGGAGATTCAAGGAAAAGAAAGAAGCAGCAGAACCTGAAGCTGATCCAGAGAGGGACCAGAGAACTGTTTTTGCCTACCAGATGCCTCTGAAGGCGACTGAGCGAGATGTTTATGAATTCTTCTCAAAAGCTGGAAAGGTGAGGGATGTCAGATTGATCATGGACCGGAATTCACGACGGTCAAAAGGGGTTGGGTATATTGAATTTTATGATGCGATGTCTGTGCCAATGGCGATTGCTCTCTCCGGTCAACTACTTCTAGGGCAGCCAGTGATGGTTAAACCATCTGAAGCTGAAAAGAACCTTGTCCAGTCAACAGCTTCCACTGGCTCAAGTGTGACAGGCCCATATGGACCAACTGATAGGAAGTTGTATGTTGGTAATTTGCATTTCAACATGACAGAGCAACAGCTACGTCAGATCTTTGAGCCTTTTGGTCCCGTGGAGCTGGTGCAGCTACCCCTTGACCTGGAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44129.p1 GENE.R_Transcript_44129~~R_Transcript_44129.p1 ORF type:3prime_partial len:319 (+),score=107.82,RRM_1|PF00076.18|5.2e+03,RRM_1|PF00076.18|4.7e-11,RRM_1|PF00076.18|5.6e-09,RRM_6|PF14259.2|3e-05,RRM_6|PF14259.2|0.00029,MIP-T3|PF10243.5|6.5e-07 R_Transcript_44129:374-1327(+)
MDFDEYEYLEKAVEDPILDSKSKSKSKSSKESSEKRERGYRKNDNEGEEEERRRKKSRSEEENGGGERRREERERSERRREKEDRHRSGDRDGDRRDRDREREKERERRERREREKEKERERERSRRSSSRSRRHDSRERERERERERERELRELESRESRRFKEKKEAAEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSTASTGSSVTGPYGPTDRKLYVGNLHFNMTEQQLRQIFEPFGPVELVQLPLDLE

Click here to download the sequence:
Link to NCBI Protein BLAST