Transcript Information: R_Transcript_44249.p1


Annotated TAIR IDAT3G08505.2
Annotated Gene Namezinc finger (CCCH-type/C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2580603-2582043 | Reverse length=323
E-Value8E-113
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.1629560072166
Replicate 22.1180478490125
Replicate 33.5666192309799
Condition 2: 8 Hour
Replicate 12.7385506848893
Replicate 23.4816285322899
Replicate 33.8611978731964
Condition 3: 24 Hour
Replicate 12.8193798349812
Replicate 22.8536409529475
Replicate 32.9759598477799


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44249.p1 GENE.R_Transcript_44249~~R_Transcript_44249.p1 ORF type:complete len:456 (+),score=78.27,zf-CCCH|PF00642.20|0.041,zf-CCCH|PF00642.20|3.7e-06,zf-CCCH|PF00642.20|0.00041,zf-CCCH|PF00642.20|0.36,Torus|PF16131.1|0.0002,Torus|PF16131.1|0.0031,Torus|PF16131.1|0.0084,Torus|PF16131.1|2.3,zf-CCCH_3|PF15663.1|2.4e-08,zf-CCCH_3|PF15663.1|56,zf-CCCH_3|PF15663.1|5.4e+02,zf-RING_2|PF13639.2|6.7e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1e-07,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4e-07,zf-CCCH_2|PF14608.2|0.012,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|3.3,zf-CCCH_2|PF14608.2|1.1,zf-RING_5|PF14634.2|6.3e+03,zf-RING_5|PF14634.2|1.4e+04,zf-RING_5|PF14634.2|9.9e-06,zf-RING_5|PF14634.2|8.9e+03 R_Transcript_44249:158-1525(+)
ATGTCCAATAGGATTTTGTGCAAGTTCTTTGCTCATGGAGCATGTCTCAAAGGAGAGCATTGTGAATATGCACATGATTGGACTGCCCCTGCAAATAATATTTGCACCTTCTATCAGAGAGGAAACTGCGCTTATGGCAGTAGATGCAGATATGATCATGTCAAAGTTTCTAGGACGCAGTCTTCTGGTTCCTCATCATCAACTGTTTCCGTTGGGCCAAAAGTCTCAGGTTCATCTTCAATTTCGTCTTCTGCAGTAACTATAAGTGGGACGGCTCCAATTGCTAGTGTTAAAGCAGAACTATCTCCTTCAAGCAGACAATTCCTTCCTTCAAGCATAACTACATGGAGTCAACAATCTGGCACTACTGACACTTTAGAAGATGGTTTTGGGGGGGAAACTAGGGTAGATGGACCGGCTGATCAAGTTATTTGTTCATTTGCTGCTGCTGGACACTGCCCTAGGGGGGACAAATGTCCTCACATTCACGGGGACTTGTGTCCAACTTGTGGAAAGCATTGCTTGCATCCCTTTAGGCCCAAAGAACGCGAAGAACATTCCAGAGCTTGTGAGAAAATGCAAAGGCACCTTGAATCACTTAAACGTAGTCAAGAGATAGAATGCAGTGTGTGCTTAGAGCGTGTGCTCTCAAAGCTAAAACCAGGTGAACGGAAGTTTGGGTTGATGTCAGAATGTGATCATCCATTCTGTATTTCTTGCATCAGGGAATGGCGTAGCAGTTCTCCTACTTCTGGGATGGATGTTAATTCCACATTAAGGGCCTGCCCCATATGTCGCAAGCTTTCATATTTTGTGATTCCAAGTGTAATTTGGTATTTCTCAAAAGATGAGAAGGAGGAAATCATTGACAATTACAAGGCCAAACTTAAGTCCATTGATTGCAAGTATTTTGATTTTGGCAATGGTTCATGCCCTTTTGGACCTAGTTGCTTTTACAAGCACGCGGTGAAGCCAGGCTTATGTTGGAAAAGGTGTATGAACCCAAAAATGTGCAGCAAACCATACATATATCGTCGCCATAAGGGCTTAAGGGAGCAAATGGACGATGTCAATGATGAAGATTTATTATCTGAACATCTTGCAACATGGATGCTTAATGGACTAGAGGAAAACTACGCTAATGCTTATGATGAAGAAGATTTTCTTATTCCCTGGGAGAGTGCTTTCATGTGTTTGCAGCCTCCATATGCTGAGGACGATGATGATGATGTACCCTTCAATCATGCTTATCGTGATGGCCGTCTTGAGGAAGTGGCTTTATGTCATCTTGGGGCTTCTGATGGACAGACTATTATTGTTAAAAATATTAGGCTTTCAGACTTCCTCAACGATATGCGCATAAGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44249.p1 GENE.R_Transcript_44249~~R_Transcript_44249.p1 ORF type:complete len:456 (+),score=78.27,zf-CCCH|PF00642.20|0.041,zf-CCCH|PF00642.20|3.7e-06,zf-CCCH|PF00642.20|0.00041,zf-CCCH|PF00642.20|0.36,Torus|PF16131.1|0.0002,Torus|PF16131.1|0.0031,Torus|PF16131.1|0.0084,Torus|PF16131.1|2.3,zf-CCCH_3|PF15663.1|2.4e-08,zf-CCCH_3|PF15663.1|56,zf-CCCH_3|PF15663.1|5.4e+02,zf-RING_2|PF13639.2|6.7e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1e-07,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4e-07,zf-CCCH_2|PF14608.2|0.012,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|3.3,zf-CCCH_2|PF14608.2|1.1,zf-RING_5|PF14634.2|6.3e+03,zf-RING_5|PF14634.2|1.4e+04,zf-RING_5|PF14634.2|9.9e-06,zf-RING_5|PF14634.2|8.9e+03 R_Transcript_44249:158-1525(+)
MSNRILCKFFAHGACLKGEHCEYAHDWTAPANNICTFYQRGNCAYGSRCRYDHVKVSRTQSSGSSSSTVSVGPKVSGSSSISSSAVTISGTAPIASVKAELSPSSRQFLPSSITTWSQQSGTTDTLEDGFGGETRVDGPADQVICSFAAAGHCPRGDKCPHIHGDLCPTCGKHCLHPFRPKEREEHSRACEKMQRHLESLKRSQEIECSVCLERVLSKLKPGERKFGLMSECDHPFCISCIREWRSSSPTSGMDVNSTLRACPICRKLSYFVIPSVIWYFSKDEKEEIIDNYKAKLKSIDCKYFDFGNGSCPFGPSCFYKHAVKPGLCWKRCMNPKMCSKPYIYRRHKGLREQMDDVNDEDLLSEHLATWMLNGLEENYANAYDEEDFLIPWESAFMCLQPPYAEDDDDDVPFNHAYRDGRLEEVALCHLGASDGQTIIVKNIRLSDFLNDMRIS*

Click here to download the sequence:
Link to NCBI Protein BLAST