Transcript Information: R_Transcript_44250.p1


Annotated TAIR IDAT3G08505.2
Annotated Gene Namezinc finger (CCCH-type/C3HC4-type RING finger) family protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr3:2580603-2582043 | Reverse length=323
E-Value8E-113
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4666163452323
Replicate 23.7540162906479
Replicate 33.4764903212456
Condition 2: 8 Hour
Replicate 14.3779301153079
Replicate 25.7645516596819
Replicate 36.1889067395914
Condition 3: 24 Hour
Replicate 13.7706169875023
Replicate 23.5306755396558
Replicate 34.2319262700238


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44250.p1 GENE.R_Transcript_44250~~R_Transcript_44250.p1 ORF type:complete len:481 (+),score=83.59,Torus|PF16131.1|0.00018,Torus|PF16131.1|0.0033,Torus|PF16131.1|0.009,Torus|PF16131.1|2.4,zf-CCCH|PF00642.20|0.044,zf-CCCH|PF00642.20|4e-06,zf-CCCH|PF00642.20|0.00043,zf-CCCH|PF00642.20|0.38,zf-CCCH|PF00642.20|7.1e+03,zf-CCCH_3|PF15663.1|2.6e-08,zf-CCCH_3|PF15663.1|60,zf-CCCH_3|PF15663.1|5.8e+02,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.1e-07,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.3e-07,zf-CCCH_2|PF14608.2|0.013,zf-CCCH_2|PF14608.2|3.7,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|1 R_Transcript_44250:158-1600(+)
ATGTCCAATAGGATTTTGTGCAAGTTCTTTGCTCATGGAGCATGTCTCAAAGGAGAGCATTGTGAATATGCACATGATTGGACTGCCCCTGCAAATAATATTTGCACCTTCTATCAGAGAGGAAACTGCGCTTATGGCAGTAGATGCAGATATGATCATGTCAAAGTTTCTAGGACGCAGTCTTCTGGTTCCTCATCATCAACTGTTTCCGTTGGGCCAAAAGTCTCAGGTTCATCTTCAATTTCGTCTTCTGCAGTAACTATAAGTGGGACGGCTCCAATTGCTAGTGTTAAAGCAGAACTATCTCCTTCAAGCAGACAATTCCTTCCTTCAAGCATAACTACATGGAGTCAACAATCTGGCACTACTGACACTTTAGAAGATGGTTTTGGGGGGGAAACTAGGGTAGATGGACCGGCTGATCAAGTTATTTGTTCATTTGCTGCTGCTGGACACTGCCCTAGGGGGGACAAATGTCCTCACATTCACGGGGACTTGTGTCCAACTTGTGGAAAGCATTGCTTGCATCCCTTTAGGCCCAAAGAACGCGAAGAACATTCCAGAGCTTGTGAGAAAATGCAAAGGCACCTTGAATCACTTAAACGTAGTCAAGAGATAGAATGCAGTGTGTGCTTAGAGCGTGTGCTCTCAAAGCTAAAACCAGGTGAACGGAAGTTTGGGTTGATGTCAGAATGTGATCATCCATTCTGTATTTCTTGCATCAGGGAATGGCGTAGCAGTTCTCCTACTTCTGGGATGGATGTTAATTCCACATTAAGGGCCTGCCCCATATGTCGCAAGCTTTCATATTTTGTGATTCCAAGTGTAATTTGGTATTTCTCAAAAGATGAGAAGGAGGAAATCATTGACAATTACAAGGCCAAACTTAAGTCCATTGATTGCAAGTATTTTGATTTTGGCAATGGTTCATGCCCTTTTGGACCTAGTTGCTTTTACAAGCACGCGGTGAAGCCAGGCTTATGTTGGAAAAGGTGTATGAACCCAAAAATGTGCAGCAAACCATACATATATCGTCGCCATAAGGGCTTAAGGGAGCAAATGGACGATGTCAATGATGAAGATTTATTATCTGAACATCTTGCAACATGGATGCTTAATGGACTAGAGGAAAACTACGCTAATGCTTATGATGAAGAAGATTTTCTTATTCCCTGGGAGAGTGCTTTCATGTGTTTGCAGCCTCCATATGCTGAGGACGATGATGATGATGTACCCTTCAATGTTGGTCAAATGGACTCTGTACATGTTTTGTTTGATTACTTATACCGACCCTATCAGGGTCTAAAGGAAGAATTGGAGCTAGATAAACTTGAGAAAAAAAAATATTGTGGTGATTATAATGAAGAAGATTTTCTTACACCCTGGCAGAGGTCTTTCATGTGGTCGCAGCTGGGATATGATATGAGTGATGATGACGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44250.p1 GENE.R_Transcript_44250~~R_Transcript_44250.p1 ORF type:complete len:481 (+),score=83.59,Torus|PF16131.1|0.00018,Torus|PF16131.1|0.0033,Torus|PF16131.1|0.009,Torus|PF16131.1|2.4,zf-CCCH|PF00642.20|0.044,zf-CCCH|PF00642.20|4e-06,zf-CCCH|PF00642.20|0.00043,zf-CCCH|PF00642.20|0.38,zf-CCCH|PF00642.20|7.1e+03,zf-CCCH_3|PF15663.1|2.6e-08,zf-CCCH_3|PF15663.1|60,zf-CCCH_3|PF15663.1|5.8e+02,zf-RING_2|PF13639.2|8e+03,zf-RING_2|PF13639.2|1.6e+04,zf-RING_2|PF13639.2|1.1e-07,zf-RING_2|PF13639.2|1.6e+04,zf-C3HC4|PF00097.21|1.6e+04,zf-C3HC4|PF00097.21|4.3e-07,zf-CCCH_2|PF14608.2|0.013,zf-CCCH_2|PF14608.2|3.7,zf-CCCH_2|PF14608.2|3.5,zf-CCCH_2|PF14608.2|1 R_Transcript_44250:158-1600(+)
MSNRILCKFFAHGACLKGEHCEYAHDWTAPANNICTFYQRGNCAYGSRCRYDHVKVSRTQSSGSSSSTVSVGPKVSGSSSISSSAVTISGTAPIASVKAELSPSSRQFLPSSITTWSQQSGTTDTLEDGFGGETRVDGPADQVICSFAAAGHCPRGDKCPHIHGDLCPTCGKHCLHPFRPKEREEHSRACEKMQRHLESLKRSQEIECSVCLERVLSKLKPGERKFGLMSECDHPFCISCIREWRSSSPTSGMDVNSTLRACPICRKLSYFVIPSVIWYFSKDEKEEIIDNYKAKLKSIDCKYFDFGNGSCPFGPSCFYKHAVKPGLCWKRCMNPKMCSKPYIYRRHKGLREQMDDVNDEDLLSEHLATWMLNGLEENYANAYDEEDFLIPWESAFMCLQPPYAEDDDDDVPFNVGQMDSVHVLFDYLYRPYQGLKEELELDKLEKKKYCGDYNEEDFLTPWQRSFMWSQLGYDMSDDDD*

Click here to download the sequence:
Link to NCBI Protein BLAST