Transcript Information: R_Transcript_4432.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.5435143045218
Replicate 23.3673311988403
Replicate 35.546599983974
Condition 2: 8 Hour
Replicate 16.6989630516048
Replicate 28.5787030963039
Replicate 313.984731452814
Condition 3: 24 Hour
Replicate 16.7862700610194
Replicate 24.8549312023283
Replicate 38.1906819425811


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4432.p1 GENE.R_Transcript_4432~~R_Transcript_4432.p1 ORF type:complete len:318 (+),score=66.34,UBN2_3|PF14244.2|1.6e-36,Retrotrans_gag|PF03732.13|1.2e-08 R_Transcript_4432:260-1213(+)
ATGGCTGAAGAAGGTCAACCTAAACCTCTTGAACCTACTGATCCTTTGTACCTCCATCCATCTGATGGACCCAACTCACTGAAAGTAGAACCAGTTCTTACTGGACCTGGAAATTTTAGACCATGGAAAAGACAAATGGAAATAGCTCTAGCTACAAAGAGGAAACTAGGCTTTGTGACTGGTGTTGTGACCAGACCCTCCACTATCACTACCAAGCAAGAGGCTTGGGATACAAGTAACAGCATTGTGATAGCATGGATATTGAACAATGTTAATGAGTCCATTAGGAGGTCTGTAATGTATATGGAGACTGCTAGGAGCATCTGGAGTAATCTGTGCACTAGATTCACTGTGAGTAATGGTTCAAGGAAGTATAAGTTGAATAGGGATACTTATGAGATCAGGCAGAATAATAGACCTATCTCAGAGTATTATACTGAACTTCAAGTTGTCTGGGAAGAACTAGAGTCTTTGAGTGATTATCCCCCAATATTGAATGTCACTGCTGAAGTCTTAGCTTTTATGAAGGCTATAGATAACCAAAAGGAGGAACTCCGGCTATTTCAATTCTTAAATGGGCTTGATTTCAAATATGGTATCATGAGAAGCAACATACTCATGATGGATCCTCTTCCTGGTGTGGAAGCCACAGTAAGCATGCTACAGCAAGAGGAAGGTCAGGATGAGATGTTGGTTGATGTGAAGGAGGAAGGAAGTACTTCTGCATTTTACAGTAAGGGAGAAAACTCTCAAATGTTAATCTGCACTGCATGTGGTATGAAAGGTCACACCAAAGAAAAATGTTGGGCCATCATAGGTTATCCTCCTTGGCATCCTAAGGCTAAGAAGGGTAATCCTAACTTTAGAGGTCAGACAATTGGACCTGCCAAGCCTTTCATTGCCCAACAAGGAAAAGGGAAACCTTATCAAAAAACTCAACTCACCAGGACCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4432.p1 GENE.R_Transcript_4432~~R_Transcript_4432.p1 ORF type:complete len:318 (+),score=66.34,UBN2_3|PF14244.2|1.6e-36,Retrotrans_gag|PF03732.13|1.2e-08 R_Transcript_4432:260-1213(+)
MAEEGQPKPLEPTDPLYLHPSDGPNSLKVEPVLTGPGNFRPWKRQMEIALATKRKLGFVTGVVTRPSTITTKQEAWDTSNSIVIAWILNNVNESIRRSVMYMETARSIWSNLCTRFTVSNGSRKYKLNRDTYEIRQNNRPISEYYTELQVVWEELESLSDYPPILNVTAEVLAFMKAIDNQKEELRLFQFLNGLDFKYGIMRSNILMMDPLPGVEATVSMLQQEEGQDEMLVDVKEEGSTSAFYSKGENSQMLICTACGMKGHTKEKCWAIIGYPPWHPKAKKGNPNFRGQTIGPAKPFIAQQGKGKPYQKTQLTRT*

Click here to download the sequence:
Link to NCBI Protein BLAST