Transcript Information: R_Transcript_4435.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.99561605207557
Replicate 20.38175091665997
Replicate 30.69414356351977
Condition 2: 8 Hour
Replicate 10
Replicate 20.81312297604311
Replicate 31.6501464200352
Condition 3: 24 Hour
Replicate 10.69569112811225
Replicate 20.40100470710141
Replicate 31.1938748011035


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_4435.p3 GENE.R_Transcript_4435~~R_Transcript_4435.p3 ORF type:3prime_partial len:165 (+),score=26.61,UBN2_3|PF14244.2|5.3e-30,Retrotrans_gag|PF03732.13|3.2e-09 R_Transcript_4435:3036-3527(+)
ATGGAGATAGCCCTGGCCACAAAGAGAAAATTAGCCTTTGTAACTGGAGTGGTAACTAGGCCTATACCAGTTAGTGCCAAGCAAGATGCTTGGGACACATGTAACAATATTGTGATTGCCTGGATTCTAAACAATGTGAGCGATTCTATTAAGAGATCTATCATGCACATGGAGTCTGCTAGGGCCATTTGGAGCAATCTGTGTACAAGGTTTACAGTGAGTAATGAGTCAAGAAAATACAAGCTGAACAAGGATACTTATGAGATTAGACAGAATGGTAGGTCAATCTCTGAGTATTACACTGAGCTACAGGTGGTCTGGGACGAACTAGAGTGCTTGAATGACTACCCTCCTGTTCTAAATCTCACTGCAGAGATTTCAGCTTATGTAAGGGCTATTGACAATCAAAAGGAGGAACTCAGACTATTTCAGTTCTTCAATGGACTGGATTCCAAGTATGGAATATTGAGGAGTAATATTCTGATGATGGAC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_4435.p3 GENE.R_Transcript_4435~~R_Transcript_4435.p3 ORF type:3prime_partial len:165 (+),score=26.61,UBN2_3|PF14244.2|5.3e-30,Retrotrans_gag|PF03732.13|3.2e-09 R_Transcript_4435:3036-3527(+)
MEIALATKRKLAFVTGVVTRPIPVSAKQDAWDTCNNIVIAWILNNVSDSIKRSIMHMESARAIWSNLCTRFTVSNESRKYKLNKDTYEIRQNGRSISEYYTELQVVWDELECLNDYPPVLNLTAEISAYVRAIDNQKEELRLFQFFNGLDSKYGILRSNILMMD

Click here to download the sequence:
Link to NCBI Protein BLAST