Transcript Information: R_Transcript_443681.p1


Annotated TAIR IDAT4G15093.1
Annotated Gene Namecatalytic LigB subunit of aromatic ring-opening dioxygenase family
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:8618454-8619472 | Forward length=269
E-Value4E-80
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.0652618172013
Replicate 210.114496878283
Replicate 37.458007589445
Condition 2: 8 Hour
Replicate 12.6844968214588
Replicate 23.9372981315044
Replicate 34.5228265665416
Condition 3: 24 Hour
Replicate 110.678049873351
Replicate 212.016818797524
Replicate 39.6713113732802


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_443681.p1 GENE.R_Transcript_443681~~R_Transcript_443681.p1 ORF type:complete len:301 (+),score=57.85,LigB|PF02900.14|1.2e-49 R_Transcript_443681:91-903(+)
ATGAGTGAGAAAGAAATGATAAAGGAGACGTTCTATCTATCTCATGGGAACCCAATATTGGCGGTAGATGAGAAAGTAGTGGCAAGGAGGTTCTTTGAGAAATGGACAGAGAAAGAGTACCCAAACACAAAGCAGCCTAAAGCCATTCTTATTGTATCTGCTCACTGGGAAACTCAAGTCCCCAGTGTCAGTGCTGTTGTTGATCACACCGATCTTATCTATGATATTGCTGAAGTCCCTCCTTGTACATTTCAGATCAAGTATCCAGCAGTGGGATCTCCAGAATTGGCAAGAAGGGTAGAAGAACTACTGAAAGAATCAGGGTACCAATGTGAAATAGATACAAAGAGAGGACTAGATCATGCATCATGGGTGCCTCTAATGCTGATGTATCCAAAAGCCAATATCCCTGTATGTCAGCTGTCAGTTCAGTCACATTTGGATGGCACACACCACTTTAATGTGGGAAGAGCATTGTCCCCTCTTAAAGAGGATGGTTATCTTATCATTGGATCTGGAGGTGCTGTTCATCCTTCTGATGATACCCCTCATTTTTATGATGGTGTTGCACCTTGGGCCGCTGAGTTTGATAACTGGCTAGAAGATGCTCTTACTAATGGAAGGTACGAAGATGTGAATAATTATAAAACAAAAGCACCAAACTGGGAACTAGCACATCCATTTCCAGAACACTTCTACCCGTTGATAGTGGCAATGGGTGCTTCAGGTGAAAACTCCAAGGCGGAGCTCATTCATCGCAGTTGGGATCATGGTACTCTTGGCTATGCCTCTTACAAGTTCACTTCCCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_443681.p1 GENE.R_Transcript_443681~~R_Transcript_443681.p1 ORF type:complete len:301 (+),score=57.85,LigB|PF02900.14|1.2e-49 R_Transcript_443681:91-903(+)
MSEKEMIKETFYLSHGNPILAVDEKVVARRFFEKWTEKEYPNTKQPKAILIVSAHWETQVPSVSAVVDHTDLIYDIAEVPPCTFQIKYPAVGSPELARRVEELLKESGYQCEIDTKRGLDHASWVPLMLMYPKANIPVCQLSVQSHLDGTHHFNVGRALSPLKEDGYLIIGSGGAVHPSDDTPHFYDGVAPWAAEFDNWLEDALTNGRYEDVNNYKTKAPNWELAHPFPEHFYPLIVAMGASGENSKAELIHRSWDHGTLGYASYKFTSP*

Click here to download the sequence:
Link to NCBI Protein BLAST