Transcript Information: R_Transcript_44387.p1


Annotated TAIR IDAT5G04810.1
Annotated Gene Namepentatricopeptide (PPR) repeat-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:1390049-1393760 | Forward length=952
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.0583175417416
Replicate 24.4742636022257
Replicate 35.0718660166117
Condition 2: 8 Hour
Replicate 15.1160694952144
Replicate 25.7877958196
Replicate 37.8870823693573
Condition 3: 24 Hour
Replicate 16.8968880341024
Replicate 26.2818512848422
Replicate 37.8950452456896


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44387.p1 GENE.R_Transcript_44387~~R_Transcript_44387.p1 ORF type:5prime_partial len:962 (+),score=206.86,PPR_2|PF13041.2|6.5e-08,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|97,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|2.8e-12,PPR_2|PF13041.2|4.2e-05,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|3.4e-10,PPR_2|PF13041.2|7.3e-14,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|1e-13,PPR_2|PF13041.2|3e-06,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|0.084,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|6.1e-05,PPR_1|PF12854.3|0.65,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|5.7e-06,PPR_1|PF12854.3|0.00085,PPR_1|PF12854.3|4.8e-05,PPR_1|PF12854.3|4.9e-08,PPR_1|PF12854.3|4.1e-09,PPR_1|PF12854.3|6.1e-08,PPR_1|PF12854.3|4.1e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.0005,PPR|PF01535.16|0.0025,PPR|PF01535.16|5.1e-05,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.0054,PPR|PF01535.16|6e-06,PPR|PF01535.16|4.9e-06,PPR|PF01535.16|1.7e-06,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|0.00025,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|5.5e-08,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|3e-06,PPR_3|PF13812.2|2.3e+03,ATP13|PF12921.3|0.075,ATP13|PF12921.3|2.9e+03,ATP13|PF12921.3|0.47,ATP13|PF12921.3|3.8,ATP13|PF12921.3|20,ATP13|PF12921.3|17,ATP13|PF12921.3|7,RRM_1|PF00076.18|2.2e-09,RRM_1|PF00076.18|1.3e+04,TPR_11|PF13414.2|1.8e+02,TPR_11|PF13414.2|3e+02,TPR_11|PF13414.2|0.0052,TPR_11|PF13414.2|3.1,TPR_11|PF13414.2|6.4e+03,TPR_14|PF13428.2|63,TPR_14|PF13428.2|11,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.6e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|2.2e+03,TPR_12|PF13424.2|32,TPR_12|PF13424.2|5.6e+02,TPR_12|PF13424.2|1.9e+02,TPR_12|PF13424.2|17,TPR_12|PF13424.2|1.3e+04,TPR_12|PF13424.2|21,TPR_6|PF13174.2|1.2e+02,TPR_6|PF13174.2|1.5,TPR_6|PF13174.2|1.9e+02,TPR_6|PF13174.2|1.6e+04,TPR_6|PF13174.2|1.3e+03,TPR_6|PF13174.2|7.1e+03,TPR_6|PF13174.2|2.3e+02 R_Transcript_44387:1-2886(+)
CTGCTGTCTTCTTGGGTATCTACAGTATCATCAAAACAGAACAGAGAGGGGAAATGGTGTTATGCTACAGTATCTTCAGGCAGTGAGCTCCACTTACAGTATCTGGATATGTTCTCTCTCTCCTCCACCACCACCACTCACTCTCCTTTCTCTTTCCCTCCTCTCCTCACTAGTAAATCTCACCCCCCTTTTTCTTTCTCCCTTAACAACAACTCCTCAGACCCTTCTTCTTCTTCTCAATTGTCATCCCAATTCCAATCCCATCTTCGCCGCCCTCAAACCCTTAAACCCTCGAACCCTCCTCCTAAACCCCCTTCTTCAAACCCTCTCAAAACCCTCCAATTTCCCAAACCCCCCACTACTCCTCACTCATTAACCCCCAAACTTCGCCTCACCAGCAAAATCTCCCCACCGCCCCCGCCACCCCCAGCCCCATTAATCTCTTCGTCCCCTGAAAATGTTGTTTCGGAGGCCGAGGGTAATGATGAGGAGGGTTCTAAGGAGGTGGAGGAATTTCGACAAGTGGGTAAGATATTTGTAGGGAATTTGCCCACCTGGGTGAAGAAAACCGAGGTGGCCGAGTTCTTCCGGCAATTCGGGCCAATTCAGAATGCGATCTTGATTAAAGGGCATGAGGATTTTGAGAGGAATTTGGGGTTTGGGTTTGTTGTTTATGGTGGCCCCACCGCCGAGAAGTCAGCCCTCGAGGCTGTGGAGTTTGATGGGGTGGAGTTTCATGGGAGGATTTTGACCGTCAAATTGGATGATGGGAGGAGATTGAAAACCCGGGCCGTCGAGAGGGAGAGGTGGGTTCAGGAGGGTGGGGATGACAGGGAGTATAGGTCCCAGTGGCATCAGGAGCGGGACGGGTCTCGGAGGGAGTTTCGGAGGGTTCTGGACTCCCATCCCGAGAATTGGCAGGTCGTTGTTCGTGCTTTCGAGAGGATTAGCAAGCCATCAAGGAAAGAGTATGGGTTGATGGTATCTTATTATGCAAGACGTGGGGACATGCATCGTGCACGTGAAACTTTTGAAAGAATGCGAGCCAGAGGAATAGAGCCAACTTCACATGTCTTTACAAGCCTTATCCATGCCTATGCAGTTGGCAGAGACATGGAAGAAGCAATGTCATGTGTGAGGAAGATGAAGGAAGAAGGAATTGAGATGAGTTTGGTGACGTACAGCATTCTTGTTGGAGGCTTTGCTAGAATTGGCAATGTTGAGGCTGCAGATCAATGGTTCAATGAGGCAAAAGTGCAGTGTACCACTCTGAATGGAATAATCTATGGCAATATAATATATGCCTACTGCCAAACTTGTAACATGGACCGTGCTGAAGCTTTAGTTAGGGAGATGGAAGAACAGGGTATTGATGCTCCAATTGATATATACCATACTATGATGGATGGTTACACCATGATTGGAAACGAAGAAAAATGTTTGATTGTGTTTGAGAGATTGAAGGAATGTGGGTTTGTGCCTTCTGTCATCACTTATGGGTGTCTAATTAATCTTTACTCTAAGATGGGAAAAGTTTCAAAGGCCTTAGAGGTTAGCAAAATGATGAAATCTTCTGGCATTCGGCATAACATGAAGACCTATTCGATGTTGATCAATGGTTTTTTGAGGTTGAAAGATTGGGCTAATGCATTTGCTATTTTTGAAGACGTTATAAGTGATGGTCTCAAACCAGATGTTGTGCTTTACAATAATATTATTAGAGCTTTTTGTGGAATGGGTAATATGGACCGTGCCATTCGCATGGTTGAGCAGATGAGGAAAGAAAGACATAGGCCCACCACAAGAACTTTTATGCCCGTCATTCATGGTTTTGCTAGAGCTGGAGATATAAGAAGAGCCCTTGAAATTTTCAATATGATGCGGAGGAATGGATGCTTTCCAACTGTGCACACATTTAATGCCTTGATTCTCGGCCTTGTTGAAAAGCGCCAGATGGAAAAGGCAGTTGAAATATTAGATGAGATGGCATTAGCAGGGATAACCCCAAATGTGCATACATATACGACAATTATGCAAGGTTACGCAGCTTTGGGTGATACTGGAAAAGCCTTTGAATACTTTACTAAAGTAAAAGAGGAAGGACTCCAGCTTGATGTATATGCATATGAGGCCTTGCTCAAGGCATGTTGCAAATCTGGGAGGATGCAAAGTGCTCTAGCTGTCACGAGGGAGATGAGTATGCAGAATATCCCAAGGAATACATTTGTTTATAATATTTTAATTGATGGGTGGGCTCGAAGAGGTGATGTTTGGGAGGCTGCGGACTTACTCCAACAAATGAGACAAGATGGTGTTCAACCGGATATTCACACTTACACATCCTTCATAAACGGATGTTGCAAGGCTGGAGATATGATGAGAGCAATGAGGACAATTCAAGAAATGGAAGCAGTAGGGTTGAAGCCTAACGTCAAGACTTACACAACATTGATACATGGTTGGGCGCGTGCATCTCTACCAGAAAAGGCACTGAGGTGTTTTGAAGAGATGAAAACAGCTGGCTTAAAGCCGGATAAAGCAGTGTATCATTGCCTGATGACATCTTTATTGTCAAGAGCTACTGTAGCAGAAGAGTACATATGTTCTGGAATCCTGAGTATTTCTCGAGAAATGACAGAATCTGGCTTGACAGTTGATATGGGCACTGCTGTTCACTGGTCCAGGTGTCTGCGTAAGATTGAAAGGACAGGTGGGGAACTTACAGAAGCTTTGCAGAAAACCTTCCCACCTGACTGGAATGCTAGTAACCTTCCATCGTCATCTGTAGCTGACGCTAATGAGTCGGAATCTGAAGTTGAGGATATTGATGCAAGTTATGAAGATTTCATGGATAGTGATGATGACAATGATGAAGTAGATCTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44387.p1 GENE.R_Transcript_44387~~R_Transcript_44387.p1 ORF type:5prime_partial len:962 (+),score=206.86,PPR_2|PF13041.2|6.5e-08,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|97,PPR_2|PF13041.2|0.0031,PPR_2|PF13041.2|0.00024,PPR_2|PF13041.2|2.8e-12,PPR_2|PF13041.2|4.2e-05,PPR_2|PF13041.2|1.2e-10,PPR_2|PF13041.2|3.4e-10,PPR_2|PF13041.2|7.3e-14,PPR_2|PF13041.2|1.7e-11,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|1e-13,PPR_2|PF13041.2|3e-06,PPR_1|PF12854.3|1.6,PPR_1|PF12854.3|0.084,PPR_1|PF12854.3|0.0012,PPR_1|PF12854.3|0.007,PPR_1|PF12854.3|6.1e-05,PPR_1|PF12854.3|0.65,PPR_1|PF12854.3|2.2e-10,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|5.7e-06,PPR_1|PF12854.3|0.00085,PPR_1|PF12854.3|4.8e-05,PPR_1|PF12854.3|4.9e-08,PPR_1|PF12854.3|4.1e-09,PPR_1|PF12854.3|6.1e-08,PPR_1|PF12854.3|4.1e+03,PPR|PF01535.16|0.0019,PPR|PF01535.16|8.4e-06,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.0005,PPR|PF01535.16|0.0025,PPR|PF01535.16|5.1e-05,PPR|PF01535.16|0.017,PPR|PF01535.16|0.00011,PPR|PF01535.16|1.2e-05,PPR|PF01535.16|0.00028,PPR|PF01535.16|0.00047,PPR|PF01535.16|0.0054,PPR|PF01535.16|6e-06,PPR|PF01535.16|4.9e-06,PPR|PF01535.16|1.7e-06,PPR_3|PF13812.2|5.4e-05,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.55,PPR_3|PF13812.2|0.0004,PPR_3|PF13812.2|29,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|0.013,PPR_3|PF13812.2|0.00026,PPR_3|PF13812.2|0.00025,PPR_3|PF13812.2|0.0033,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|0.0003,PPR_3|PF13812.2|5.5e-08,PPR_3|PF13812.2|0.00011,PPR_3|PF13812.2|3e-06,PPR_3|PF13812.2|2.3e+03,ATP13|PF12921.3|0.075,ATP13|PF12921.3|2.9e+03,ATP13|PF12921.3|0.47,ATP13|PF12921.3|3.8,ATP13|PF12921.3|20,ATP13|PF12921.3|17,ATP13|PF12921.3|7,RRM_1|PF00076.18|2.2e-09,RRM_1|PF00076.18|1.3e+04,TPR_11|PF13414.2|1.8e+02,TPR_11|PF13414.2|3e+02,TPR_11|PF13414.2|0.0052,TPR_11|PF13414.2|3.1,TPR_11|PF13414.2|6.4e+03,TPR_14|PF13428.2|63,TPR_14|PF13428.2|11,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|20,TPR_14|PF13428.2|1.9e+03,TPR_14|PF13428.2|9.3e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|6.6e+02,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|2.2e+03,TPR_12|PF13424.2|32,TPR_12|PF13424.2|5.6e+02,TPR_12|PF13424.2|1.9e+02,TPR_12|PF13424.2|17,TPR_12|PF13424.2|1.3e+04,TPR_12|PF13424.2|21,TPR_6|PF13174.2|1.2e+02,TPR_6|PF13174.2|1.5,TPR_6|PF13174.2|1.9e+02,TPR_6|PF13174.2|1.6e+04,TPR_6|PF13174.2|1.3e+03,TPR_6|PF13174.2|7.1e+03,TPR_6|PF13174.2|2.3e+02 R_Transcript_44387:1-2886(+)
LLSSWVSTVSSKQNREGKWCYATVSSGSELHLQYLDMFSLSSTTTTHSPFSFPPLLTSKSHPPFSFSLNNNSSDPSSSSQLSSQFQSHLRRPQTLKPSNPPPKPPSSNPLKTLQFPKPPTTPHSLTPKLRLTSKISPPPPPPPAPLISSSPENVVSEAEGNDEEGSKEVEEFRQVGKIFVGNLPTWVKKTEVAEFFRQFGPIQNAILIKGHEDFERNLGFGFVVYGGPTAEKSALEAVEFDGVEFHGRILTVKLDDGRRLKTRAVERERWVQEGGDDREYRSQWHQERDGSRREFRRVLDSHPENWQVVVRAFERISKPSRKEYGLMVSYYARRGDMHRARETFERMRARGIEPTSHVFTSLIHAYAVGRDMEEAMSCVRKMKEEGIEMSLVTYSILVGGFARIGNVEAADQWFNEAKVQCTTLNGIIYGNIIYAYCQTCNMDRAEALVREMEEQGIDAPIDIYHTMMDGYTMIGNEEKCLIVFERLKECGFVPSVITYGCLINLYSKMGKVSKALEVSKMMKSSGIRHNMKTYSMLINGFLRLKDWANAFAIFEDVISDGLKPDVVLYNNIIRAFCGMGNMDRAIRMVEQMRKERHRPTTRTFMPVIHGFARAGDIRRALEIFNMMRRNGCFPTVHTFNALILGLVEKRQMEKAVEILDEMALAGITPNVHTYTTIMQGYAALGDTGKAFEYFTKVKEEGLQLDVYAYEALLKACCKSGRMQSALAVTREMSMQNIPRNTFVYNILIDGWARRGDVWEAADLLQQMRQDGVQPDIHTYTSFINGCCKAGDMMRAMRTIQEMEAVGLKPNVKTYTTLIHGWARASLPEKALRCFEEMKTAGLKPDKAVYHCLMTSLLSRATVAEEYICSGILSISREMTESGLTVDMGTAVHWSRCLRKIERTGGELTEALQKTFPPDWNASNLPSSSVADANESESEVEDIDASYEDFMDSDDDNDEVDL*

Click here to download the sequence:
Link to NCBI Protein BLAST