Transcript Information: R_Transcript_443899.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value9E-33
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.072003790748397
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.048295591611924
Replicate 20
Replicate 30
Condition 3: 24 Hour
Replicate 10.13584501318168
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_443899.p1 GENE.R_Transcript_443899~~R_Transcript_443899.p1 ORF type:3prime_partial len:507 (-),score=54.00,UBN2|PF14223.2|2.9e-14,UBN2_3|PF14244.2|1e-09 R_Transcript_443899:2-1519(-)
ATGTCTCACAAACCCGACTCCTCCCCTATCTCCAAGGGTTCTTCTTTTCACCCAGCCCTAACTGTCTCCAACATCAAGACACACATTCCTCTCACTCTTGCCATGGAAAATGTCCAGTATGCTAACTGGGCAGAACTGTTTAAAGTCCATTGTCGTTCTCATAAGGTTCTTCATCATATTCTCCCTCCCACTACAAAAACTAGCCCCACAACAGAACCTACTCTTTCCCCTGACGAACAAGACTTATGGGACACGTTAGATGCCATTGTGGTCCAATGGATATATTCCACCATATCTACGGACTTGTTAAACACCATTATTGAGGCTGATGCCTCGGCTCTGACATTATGGACTCGGCTCCGAGACTTATTTCAAGACAACGAGAATTCCCGTGCCATTGCTCTTGAACAAGAATTCAATTCCACTTACTTGAAGGATTTTCCCTCCGTCTCGGCATATTGTCAGCACCTTAAAACTGTTTCGGATCAACTCCGGAATGTTGGTGCGCCGGTCTCTAACAACCGGCTTGTTCTTCGTATGGTGGCAGGTCTTACTCCAGCCTTCAAGGGAGTTGCGTCTGTCATACGCCATCGCAAGGTTCTACCTCCTTTCTATGAGGCTCGATCCATGTTAGCCTTGGAGGAGGCTGGCATGAAAGAGGCCGTCGACTTGGGTGAAGAGGCCATGGTCATGGCGACTCGGGATTTAGAGGATTCTTCGGATAATAAAAATTACTCACATGGTGGACGTAATAAATCCAACAACAAACACAAAAATAAATCCCGCGGTAAAATCACCTACAACAGTGGCGGACAACCAAGTGGTAGCAACACTAGCAGTGGACAGGCCAACAATGGTGGCGGCAGCACTCGGGGATGGGGACAGCAGGCTCGTCGTGGGCAGTCGAACCAGCAACAGTCTTGGCCTCAACTCCCTCCATGGTGGGCTTGGATGCAACTACCACCGTGGGCCATACCTCCCTGCCCTTACCCCACCAGGCAGGCGGGTATTCTTGGCCCTCGACCACCGAATCAGCAGCCTTGGCACAAGCAGCAGCAGCAAGCATATGCAGCCCCGTGTACGCCTACAGATATTGAGTCTGCCATGCATACTATGTCCCTCTCCCAACCTGATCCGAATTGGTACATGGACACCGGGGCAACGTCTCATATGACTCCATCACAAGGTAATCTCTCGTCTTATTTTAATTTGAGCAAAGAACATGGCATAACTGTTGGTAGTGGTCAATCTATTCCAATTCGTGGTTACGGTCATACTTCTTTTCCCCAAGCCAATACTCCTTTGTCTCTCAAAAATGTCTTGCATGATCCTAACCTCATAAAGAACTTAGTGTCAGTACGTAAGTTCACTAGTGATAATCATGTGTCTGTGGTTTTTGATCCTTTTGGGTTTTCTGTGCATGACTTACAGACGGGGACACGGCTAATACGATGTGATAGTGCAAGTGATCTTTATCCCATCACCACCAACACATCTACTCCCATCACCTCTCCTTCG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_443899.p1 GENE.R_Transcript_443899~~R_Transcript_443899.p1 ORF type:3prime_partial len:507 (-),score=54.00,UBN2|PF14223.2|2.9e-14,UBN2_3|PF14244.2|1e-09 R_Transcript_443899:2-1519(-)
MSHKPDSSPISKGSSFHPALTVSNIKTHIPLTLAMENVQYANWAELFKVHCRSHKVLHHILPPTTKTSPTTEPTLSPDEQDLWDTLDAIVVQWIYSTISTDLLNTIIEADASALTLWTRLRDLFQDNENSRAIALEQEFNSTYLKDFPSVSAYCQHLKTVSDQLRNVGAPVSNNRLVLRMVAGLTPAFKGVASVIRHRKVLPPFYEARSMLALEEAGMKEAVDLGEEAMVMATRDLEDSSDNKNYSHGGRNKSNNKHKNKSRGKITYNSGGQPSGSNTSSGQANNGGGSTRGWGQQARRGQSNQQQSWPQLPPWWAWMQLPPWAIPPCPYPTRQAGILGPRPPNQQPWHKQQQQAYAAPCTPTDIESAMHTMSLSQPDPNWYMDTGATSHMTPSQGNLSSYFNLSKEHGITVGSGQSIPIRGYGHTSFPQANTPLSLKNVLHDPNLIKNLVSVRKFTSDNHVSVVFDPFGFSVHDLQTGTRLIRCDSASDLYPITTNTSTPITSPS

Click here to download the sequence:
Link to NCBI Protein BLAST