Transcript Information: R_Transcript_443931.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value7E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.13274880694341
Replicate 20.076350183331993
Replicate 30.083297227622373
Condition 2: 8 Hour
Replicate 10.22259877224768
Replicate 20.16262459520862
Replicate 30.23102049880493
Condition 3: 24 Hour
Replicate 10.041741467686735
Replicate 20.12030141213042
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_443931.p1 GENE.R_Transcript_443931~~R_Transcript_443931.p1 ORF type:internal len:550 (+),score=51.61,UBN2|PF14223.2|3.6e-15,gag_pre-integrs|PF13976.2|5.8e-10,UBN2_3|PF14244.2|7.6e-08,UBN2_2|PF14227.2|3.2e-06 R_Transcript_443931:3-1649(+)
AAAACTAGCCCCACAACAGAACCTACTCTTTCCCCTGACGAACAAGACTTATGGGACACGTTAGATGCCATTGTGGTCCAATGGATATATTCCACCATATCTACGGACTTGTTAAACACCATTATTGAGGCTGATGCCTCGGCTCTGACATTATGGACTCGGCTCCGAGACTTATTTCAAGACAACGAGAATTCCCGTGCCATTGCTCTTGAACAAGAATTCAATTCCACTTACTTGAAGGATTTTCCCTCCGTCTCGGCATATTGTCAGCACCTTAAAACTGTTTCGGATCAACTCCGGAATGTTGGTGCGCCGGTCTCTAACAACCGGCTTGTTCTTCGTATGTTGGCAGGTCTTACTCCAGCCTTCAAGGGAGTTGCGTCTGTCATACGCCATCGCAAGGTTCTACCTCCTTTCTATGAGGCTCGATCCATGTTAGCCTTGGAGGAGGCTGGCATGAAAGAGGCCGTCGACTTGGGTGAAGAGGCCATGGTCATGGCGACTCGGGATTTAGAGGATTCTTCGGATAATAAAAATTACTCACATGGTGGACGTAATAAATCCAACAACAAACACAAAAATAAATCCCGCGGTAAAATCACCTACAACAGTGGCGGACAACCAAGTGGTAGCAACACTAGCAGTGGACAGGCCAACAATGGTGGCGGCAGCACTCGGGGATGGGGACAGCAGGCTCGTCGTGGGCAGTCGAACCAGCAACAGTCTTGGCCTCAACTCCCTCCATGGTGGGCTTGGATGCAACTACCACCGTGGGCCATACCTCCTTGCCCTTACCCCACCAGGCAGGCGGGTATTCTTGGCCCTCGACCACCGAATCAGCAGCCTTGGCACAAGCAGCAGCAGCAAGCATATGCAGCCCCGTGTACGCCTACAGATATTGAGTCTGCCATGCATACTATGTCCCTCTCCCAACCTGATCCGAATTGGTACATGGACACCGGGGCAACGTCTCATATGACTCCATCACAAGGTAATCTCTCGTCTTATTTTAATTTGAGCAAAGAACATGGCATAACTGTTGGTAGTGGTCAATCTATTCCAATTCGTGGTTACGGTCATACTTCTTTTCCCCAAGCCAATACTCCTTTGTCTCTCAAAAATGTCTTGCATGCTCCTAACCTCATAAAGAACTTAGTGTCAGTACGTAAGTTCACTAGTGATAATCATGTGTCTGTGGTTTTTGATCCTTTTGGGTTTTCTGTGCATGACTTACAGACGGGGACACGGCTAATACGATGTGATAGTGCAAGTGATCTTTATCCCATCACCACCAACACATCTACTCCCATCACCTCTCCTTCGGCTCTCTTAGCTTCATCAGTTTGGCATGAGCGTCTGGGTCATCCGGGTGCTTCAGTTTTAGATTACCTTAGGTGTAATAAGTTGATTACCAGTACTTGTACTTCAAAGTCTAGTATTTGTCGCTCTTGTGTACTTGGAAAACATATTAAGTTGCCATTTCCTACTTCATCTTCTACTACATCTATGCCATTTGATATTATTCATAGTGATCTTTGGACTTCTCCTGTGTTGAGTACTTCGGGACACCGCTATTATGTGTTATTTTTGGATGACTACTCAAAATATTTGTGGACATTTCCTATAGCCACAAAATCAGAAGTTGTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_443931.p1 GENE.R_Transcript_443931~~R_Transcript_443931.p1 ORF type:internal len:550 (+),score=51.61,UBN2|PF14223.2|3.6e-15,gag_pre-integrs|PF13976.2|5.8e-10,UBN2_3|PF14244.2|7.6e-08,UBN2_2|PF14227.2|3.2e-06 R_Transcript_443931:3-1649(+)
KTSPTTEPTLSPDEQDLWDTLDAIVVQWIYSTISTDLLNTIIEADASALTLWTRLRDLFQDNENSRAIALEQEFNSTYLKDFPSVSAYCQHLKTVSDQLRNVGAPVSNNRLVLRMLAGLTPAFKGVASVIRHRKVLPPFYEARSMLALEEAGMKEAVDLGEEAMVMATRDLEDSSDNKNYSHGGRNKSNNKHKNKSRGKITYNSGGQPSGSNTSSGQANNGGGSTRGWGQQARRGQSNQQQSWPQLPPWWAWMQLPPWAIPPCPYPTRQAGILGPRPPNQQPWHKQQQQAYAAPCTPTDIESAMHTMSLSQPDPNWYMDTGATSHMTPSQGNLSSYFNLSKEHGITVGSGQSIPIRGYGHTSFPQANTPLSLKNVLHAPNLIKNLVSVRKFTSDNHVSVVFDPFGFSVHDLQTGTRLIRCDSASDLYPITTNTSTPITSPSALLASSVWHERLGHPGASVLDYLRCNKLITSTCTSKSSICRSCVLGKHIKLPFPTSSSTTSMPFDIIHSDLWTSPVLSTSGHRYYVLFLDDYSKYLWTFPIATKSEVV

Click here to download the sequence:
Link to NCBI Protein BLAST