Transcript Information: R_Transcript_444556.p1


Annotated TAIR IDAT5G66540.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:26556653-26559310 | Reverse length=524
E-Value3E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.4744926647751
Replicate 30.12941659658843
Condition 2: 8 Hour
Replicate 10
Replicate 20.12633266576941
Replicate 30
Condition 3: 24 Hour
Replicate 10.2594102511605
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_444556.p1 GENE.R_Transcript_444556~~R_Transcript_444556.p1 ORF type:5prime_partial len:177 (+),score=22.23,Mpp10|PF04006.8|7.8e-49,Mpp10|PF04006.8|3.2e+03 R_Transcript_444556:2-532(+)
TTGGATGCTCTTTCTAACTTCCATTATACTCCGAAACCATTGGTTCGCAAAGAAGAGAAATCTGAAAACCTTCCTGCCATCCAAATGGAAGAAGCGATTCCAACAAATGTTAGCGATGCTTCTTTATTAGCGCCGGAAGAGATCTACAACAAGAAGAAGGGTGCGATCAAGGGTGATAGCGAAATGACGAGTGAAGAGAAAGCCGCGTTACGTCGTTCAAAGAAAACTCAAAAACGAAAAGAAAAGAAACAAAAAGAAGCGGAAATGAAAGTCATCGATAAACTGAATCCGGGAATGGGCAATAAATACTCAAAAGAAAAAGCCAAAAAAGAATTGGAAGATCTCAAAAAATCAAAGAACGTGTCGTTCGTCAAAGGAAAAGACACGACGAGTTACACATCATCCAACGCATTCTTTTCTAAACTTCAAGAGAACGTTCGAAAAGATATTGAAAGTAAAAAACAAGGTAAAGATGAAAGTAAAAAGAAGAAGGAAGTCACAAAATCAAAGAGCGCTTCAATTAAATTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_444556.p1 GENE.R_Transcript_444556~~R_Transcript_444556.p1 ORF type:5prime_partial len:177 (+),score=22.23,Mpp10|PF04006.8|7.8e-49,Mpp10|PF04006.8|3.2e+03 R_Transcript_444556:2-532(+)
LDALSNFHYTPKPLVRKEEKSENLPAIQMEEAIPTNVSDASLLAPEEIYNKKKGAIKGDSEMTSEEKAALRRSKKTQKRKEKKQKEAEMKVIDKLNPGMGNKYSKEKAKKELEDLKKSKNVSFVKGKDTTSYTSSNAFFSKLQENVRKDIESKKQGKDESKKKKEVTKSKSASIKL*

Click here to download the sequence:
Link to NCBI Protein BLAST