Transcript Information: R_Transcript_44547.p1


Annotated TAIR IDAT5G13300.1
Annotated Gene NameARF GTPase-activating protein
Annotated Gene Symbol(s)SFC, VAN3, AGD3
Annotation TypeOrtholog
Chromosome Positionchr5:4255923-4262018 | Reverse length=827
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 121.0830474489
Replicate 29.6653642541372
Replicate 315.748382097355
Condition 2: 8 Hour
Replicate 115.038794456782
Replicate 216.690033201173
Replicate 324.02034049645
Condition 3: 24 Hour
Replicate 120.915886873317
Replicate 215.322042835041
Replicate 320.440801131874


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_44547.p1 GENE.R_Transcript_44547~~R_Transcript_44547.p1 ORF type:complete len:832 (+),score=164.37,BAR_3|PF16746.1|1.7e-40,ArfGap|PF01412.14|8.8e+03,ArfGap|PF01412.14|5.9e-34,Ank_5|PF13857.2|1.3e+04,Ank_5|PF13857.2|1.1e+04,Ank_5|PF13857.2|4.9e-07,Ank_5|PF13857.2|1e-12,Ank_2|PF12796.3|4.4e-09,Ank_2|PF12796.3|1.4e-09,BAR|PF03114.14|1.7e-15,Ank_4|PF13637.2|5.3e+03,Ank_4|PF13637.2|3.3e-11,Ank_4|PF13637.2|0.15,Ank|PF00023.26|1.8e-05,Ank|PF00023.26|4.8e-05,Ank|PF00023.26|1.2e+03,PH|PF00169.25|4.8e-12,Ank_3|PF13606.2|7.5e+03,Ank_3|PF13606.2|1.6e+04,Ank_3|PF13606.2|0.0062,Ank_3|PF13606.2|0.024 R_Transcript_44547:121-2616(+)
ATGCATTTCGGAAAGCTTGACGACTCTCCTATGTTCCGTCAACAGTTACAGTGCTTGGAGGAGAGTGCTGAATCATTAAGGGATAGATGTCAAAAATTCTACAAAGGAAGTCGTAAGTACACAGAAGGGCTTGGTGAGGCATATGATGGTGATATTGCTTTTGCTAGTGCTTTGGAAACATTTGGGGGAGGGCATAATGACCCGATAAGTGTTGCTTTTGGAGGCCCTGTTATGACGAAATTTACTATTGCATTAAGAGAAATTGGAACATATAAGGAAGTACTACGTTCTCAGGTTGAGCACATGCTTAATGACAGGTTGTTACAATTTGTCAATATTGATTTACATGATGTGAAGGAAGCTCGAAAACGTTTTGACAAGGCAAGTCTTGCATACGATCAGGCTCGGGAGAAGTTCCTGTCCCTGAGGAAAGGAACAAAAAGTGATGTTGCTGCAATCTTGGAGGAGGAGCTCCATCAGGCACGATCTACATTTGAGCAAGCTCGTTTTAATCTGGTAACTACTCTTTCTAACATTGAAGCGAAGAAAAGGTTTGAATTTCTGGAAGCAGTTAGTGGGACCATGGATGCACATCTCCGCTATTTCAAACAGGGCTATGAACTGTTGCATCAGATGGAACCATATATAAATCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCCAACTATGAGCAGGCAGCTCTTAATGAAAGAATGCAAGAGTACAAAAGACAAATTGATCGAGAGAGTCGGTGGTGTTCCAATGGATCTAATGGATCTCCTAATGGTGATGGTATACAAGCAATTGGTAGAAGTTCACACAAAACAATAGAGGCGGTTATGCAATCTGCAGCCAAGGGAAAGGTTCAAACCATAAGGCAGGGTTATCTTTCAAAACGTTCATCTAACCTGAGGGGTGACTGGAAAAGAAGGTTTTTTGTCCTTGATAGTCGCGGAATGCTATACTACTACCGTAAGGAGTGTAGCAAACCATCTAGCTCTGGACCACGAACTTCAGGACAGAGGAATAGTTCAGAACTGGGATCTGGATTGCTAAGCCGCTGGCTATCATCACATTATCATGGTGGCATGCATGATGAGAAATCTGTTGCGCATCATACTGTGAACTTGCTGACTGCAACGATCAAAGTTGATGCTGACCAGTCCGATTTACGGTTTTGCTTCAGGATTATCTCTCCAACCAAAAATTATACTTTACAGGCAGAAAGTGCTTTGGACCAAATGGATTGGATTGAGAAAATAACAGGAGTCATTGCTTCGCTACTAAGTTCTCAAACTCCTGAAAGGTGTCTTTCTGCTGCTCCTATGGGAAGTCTTCATCGATCAGCAAGTGAGAGTAGTTCTGTTGAAAGTTCTGAATTTGATCATACTGCAAATGAAGAGAACATTGCTGACAGATGCCTTACTGCTGTGCATCATGACCGCTCTTTCAAAGGCTCACTGCAACAACGATCATTTTTAAAGGCTGAGAAGCCAATTGATATTTTGCGGAGGGTTGGTGGCAATGACAAATGCGCTGATTGTGGCGCCCCTGAACCTGATTGGGCTTCCCTAAATCTCGGGGTACTTGTCTGTATTGAATGTTCAGGTGTTCACCGCAACCTTGGTGTCCACATATCAAAGGTAAGGTCGCTTACACTTGATGTCAAGGTGTGGGAACCCTCAGTTATATCACTATTTCAATCTCTGGGTAATACCTTCGCGAATTCTGTATGGGAAGAGTTATTGCGATCAAAAGGTGCTTTTCATGTTGATCTCCCTACATCAAGCTCACTGAAGGTTGATAAGCCCCAGCAGCTTTTTATTAGCAAGCCTAGTGCTGCTGATTCAATAGCAATAAAGGAAAAGTTCATTCATGCAAAGTATGCAGAAAAGCATTTTGTTCGGAAGCCAAAAGACAGTCAACATCTTCGGTTATTGGCTCAACAAATATGGGAAGGTGTCCGCAACAACGATAAAAAAGCTGTATATCGATACATTGTTAACTTTGAAGCAGATGTTAATGCTGTATATGAGCTGGCATGTTCAAGTTCCTCATTGACCCTTGCGAAAGTAATGCTGTTACCAGAGAAGACGAGCCATGGACAAAACCCTAGCCGTTGGACTGGGGACTTCTCATGCAAGTCATCTGAGAGCTCGTCAAGTGTATCTGCTGAAAATGACTTACTGAGCATGGAGGAACTAGATGGCTGCTCCTTGCTCCACCTTGCCTGTGAATTTTCTGACATAGGCATGTTGGAGCTACTCCTGCAGTATGGTGCCAATATTAACGCATCCGATTCAAGAGGTCAGACGCCACTTCACCGCTGTATCTTGAAAGGCAAAGCATCTGTGGCTAGATTGCTTCTCATGAGGGGTGCGGATCCGCAGGCTGTGAATGGGGAAGGTAAAACCCCTCTTGATATTGCCAAGGAGTCAAACTTTGATGATCCTGAGGTACTTGCCTTATTGTCAGACTCCAGGGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_44547.p1 GENE.R_Transcript_44547~~R_Transcript_44547.p1 ORF type:complete len:832 (+),score=164.37,BAR_3|PF16746.1|1.7e-40,ArfGap|PF01412.14|8.8e+03,ArfGap|PF01412.14|5.9e-34,Ank_5|PF13857.2|1.3e+04,Ank_5|PF13857.2|1.1e+04,Ank_5|PF13857.2|4.9e-07,Ank_5|PF13857.2|1e-12,Ank_2|PF12796.3|4.4e-09,Ank_2|PF12796.3|1.4e-09,BAR|PF03114.14|1.7e-15,Ank_4|PF13637.2|5.3e+03,Ank_4|PF13637.2|3.3e-11,Ank_4|PF13637.2|0.15,Ank|PF00023.26|1.8e-05,Ank|PF00023.26|4.8e-05,Ank|PF00023.26|1.2e+03,PH|PF00169.25|4.8e-12,Ank_3|PF13606.2|7.5e+03,Ank_3|PF13606.2|1.6e+04,Ank_3|PF13606.2|0.0062,Ank_3|PF13606.2|0.024 R_Transcript_44547:121-2616(+)
MHFGKLDDSPMFRQQLQCLEESAESLRDRCQKFYKGSRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLHDVKEARKRFDKASLAYDQAREKFLSLRKGTKSDVAAILEEELHQARSTFEQARFNLVTTLSNIEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWCSNGSNGSPNGDGIQAIGRSSHKTIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKECSKPSSSGPRTSGQRNSSELGSGLLSRWLSSHYHGGMHDEKSVAHHTVNLLTATIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQTPERCLSAAPMGSLHRSASESSSVESSEFDHTANEENIADRCLTAVHHDRSFKGSLQQRSFLKAEKPIDILRRVGGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLRSKGAFHVDLPTSSSLKVDKPQQLFISKPSAADSIAIKEKFIHAKYAEKHFVRKPKDSQHLRLLAQQIWEGVRNNDKKAVYRYIVNFEADVNAVYELACSSSSLTLAKVMLLPEKTSHGQNPSRWTGDFSCKSSESSSSVSAENDLLSMEELDGCSLLHLACEFSDIGMLELLLQYGANINASDSRGQTPLHRCILKGKASVARLLLMRGADPQAVNGEGKTPLDIAKESNFDDPEVLALLSDSRA*

Click here to download the sequence:
Link to NCBI Protein BLAST