Transcript Information: R_Transcript_445549.p1


Annotated TAIR IDAT5G48050.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:19472661-19473770 | Reverse length=369
E-Value3E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11163890492183
Replicate 20.12841773954922
Replicate 30.070051185309335
Condition 2: 8 Hour
Replicate 10.22464096281876
Replicate 20.13676380331
Replicate 30.055509512600572
Condition 3: 24 Hour
Replicate 10.21062208465784
Replicate 20.067447274894732
Replicate 30.06693487671834


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_445549.p1 GENE.R_Transcript_445549~~R_Transcript_445549.p1 ORF type:internal len:327 (+),score=41.29,UBN2|PF14223.2|4.5e-09 R_Transcript_445549:1-978(+)
CTTGCACTCGGTGATTTGTCTGTTGCCGCCTACTGTCATCGCCTTAAGACGTTGGCTGATCTCCTTGCCGGCGTCGATTCCCCCGTCTCTGACAAAACTCTTGTCATTCAGATGATAAATGGTCTCCCTCATAAGTACGGCAATGTCATCAATGCTATTCGTTACAAAACTCCTTTTCCCTCCTTCATGGAGGCTCGCTCTATGTTAACTCTTGAAGAAGATCGACTTAGCAAGGAGTCTCACCCTTCAACAACTCTTGCTACTCCTTCTGCCCCCACTGTGCTCTATGCGGGCCAACCGTCGAACTCCAGCACCAAAAATCAACACAAGAATAATGGGAAAGGGCGAAACAACCACAAAGGCAATAGAGGCAAAGGCCAGTACTACAACAATGCTGCACCTCCCAACTCGATGACGCATGCTGGCTATTACTTTAATCCTTCTCCATGGACCTGGTATATGCCTCCACCTCGTCCTCCTACTGCTTCAACATGGCCTACTCAGCATCAGCCGGGTCTCCTTGGAGCTGCTCCACGCCCTCCACCACACTCGGCACATCTAACACAATCCGTAGCTCGCCCTCCATCTCCTGCCCCTGAGCCCTCTTATCATCCTACTGCTGATTTGGCAGGAGTCTTCAATACCATGACTCTCCAGGAACCTCAAGATTCCTCATGGTACATGGACTCTGGCGCTACCGCTCATCTTGCCAATAATCCAGGTACTTTGTCTCATGTTTTTAATTCAAGCACTGCTTCATCTTCTCATAACATGGTTACGGTTGCTAATGGAACTAAAATTCCTGTATCCCTATTTGGCGGTCATGCTTTCTCGAGTCAGTCTCGTCCTCTCTATCTTAAACACGTTCTAGTCACTCCTCATATTCTTAAAAATCTTATTTCAGTCCGTCAGTTCACTCAAGACAATAATTGTTCAATAGAGTTTGACCCCTATGGTTTTTCTGTGAAGGACCTGCAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_445549.p1 GENE.R_Transcript_445549~~R_Transcript_445549.p1 ORF type:internal len:327 (+),score=41.29,UBN2|PF14223.2|4.5e-09 R_Transcript_445549:1-978(+)
LALGDLSVAAYCHRLKTLADLLAGVDSPVSDKTLVIQMINGLPHKYGNVINAIRYKTPFPSFMEARSMLTLEEDRLSKESHPSTTLATPSAPTVLYAGQPSNSSTKNQHKNNGKGRNNHKGNRGKGQYYNNAAPPNSMTHAGYYFNPSPWTWYMPPPRPPTASTWPTQHQPGLLGAAPRPPPHSAHLTQSVARPPSPAPEPSYHPTADLAGVFNTMTLQEPQDSSWYMDSGATAHLANNPGTLSHVFNSSTASSSHNMVTVANGTKIPVSLFGGHAFSSQSRPLYLKHVLVTPHILKNLISVRQFTQDNNCSIEFDPYGFSVKDLQ

Click here to download the sequence:
Link to NCBI Protein BLAST