Transcript Information: R_Transcript_446014.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value5E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.13634684049503
Replicate 30
Condition 3: 24 Hour
Replicate 10.13998662943722
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_446014.p1 GENE.R_Transcript_446014~~R_Transcript_446014.p1 ORF type:internal len:164 (+),score=30.04,UBN2_3|PF14244.2|3.2e-44,Retrotrans_gag|PF03732.13|5e-11,GILT|PF03227.12|1.3e-06,GILT|PF03227.12|6.2e+03 R_Transcript_446014:2-490(+)
ATTCTTTGCCAGCATGGTCCATCTGAATGCCTTCTGAACACAATTGAAGCCTGTGCAATAGATGCATGGCCAAGCCTGAAATTGAATGGAGACAATTTTTCTGAATGGAAGCGTTCTGCAGAGATTGCCTTAAGCGCTAAAAACAAGTTAGGATTCGTTCAAGGTACATGTGCTAAACCTGAACCTAACTCTCCTCTTTTACCTCATTGGGAGAGATGCAATAATATTGTAATAACCTGGATTCTACATTATGTTGATCCTGAAATTGGACGAAGTATCTTGTATTATAATACTGCTTCAGAGATTTGGAATGAACTTGATGATCGTTATGGTCAGTCAAATGCTCCTAGAAAATATCAAGCACATAAGCATATCAGTGAAATTGAACAAGGAAACAAATCTGTCACTGAGTATTATACTGCTTTGAAGACTTCTTGGAATGAATGCTTGTCTCTCATTGCTATGCCAACATGTATTTGTGGTGCTGGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_446014.p1 GENE.R_Transcript_446014~~R_Transcript_446014.p1 ORF type:internal len:164 (+),score=30.04,UBN2_3|PF14244.2|3.2e-44,Retrotrans_gag|PF03732.13|5e-11,GILT|PF03227.12|1.3e-06,GILT|PF03227.12|6.2e+03 R_Transcript_446014:2-490(+)
ILCQHGPSECLLNTIEACAIDAWPSLKLNGDNFSEWKRSAEIALSAKNKLGFVQGTCAKPEPNSPLLPHWERCNNIVITWILHYVDPEIGRSILYYNTASEIWNELDDRYGQSNAPRKYQAHKHISEIEQGNKSVTEYYTALKTSWNECLSLIAMPTCICGAG

Click here to download the sequence:
Link to NCBI Protein BLAST