Transcript Information: R_Transcript_446016.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value3E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.0951776572831
Replicate 22.2396053777385
Replicate 33.6650780153844
Condition 2: 8 Hour
Replicate 11.7956300961313
Replicate 22.8323783665502
Replicate 32.2992040119157
Condition 3: 24 Hour
Replicate 11.8366245782163
Replicate 21.3233155334346
Replicate 32.0428524374438


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_446016.p1 GENE.R_Transcript_446016~~R_Transcript_446016.p1 ORF type:internal len:150 (-),score=20.55,DDE_Tnp_4|PF13359.2|1.8e-15,DDE_Tnp_4|PF13359.2|6.4e+03 R_Transcript_446016:2-448(-)
GGATTGGAAGGCTCGACACATGATTCACGTAAATATTATTTGGCGGACAAAGGTTATTCAGATGAAGAAGGATACTTGACTCCGTATCCAAAGGTAGGGTACCATCAATCAGAATTTCGTGGAGGTGGTCCTAAGGGATATCGAGAAATTTTCAATTATGCTCATTCATCATTAAGGACTTGTATTGAAAGGGCATTTGAATTTCTCAAGACTCGATGGAAAATATGGATGGAAATGCCAATGAATTCATTAGATGACCAAACTAGAATTGTTTGTGCTGCTTGTGCTTTGCATAACTACATCAGGCTAAGCAACTTCGGTGATCCCGCCTTCAAGTTTATGGATGAAAATCTTGATTTCATACCTCCATATGTAGGCAATTCTGTGTTTAATTGTATGCAAGAAGATACACAAGGATCAAGATCTAAACAGATGTCAATTATTCGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_446016.p1 GENE.R_Transcript_446016~~R_Transcript_446016.p1 ORF type:internal len:150 (-),score=20.55,DDE_Tnp_4|PF13359.2|1.8e-15,DDE_Tnp_4|PF13359.2|6.4e+03 R_Transcript_446016:2-448(-)
GLEGSTHDSRKYYLADKGYSDEEGYLTPYPKVGYHQSEFRGGGPKGYREIFNYAHSSLRTCIERAFEFLKTRWKIWMEMPMNSLDDQTRIVCAACALHNYIRLSNFGDPAFKFMDENLDFIPPYVGNSVFNCMQEDTQGSRSKQMSIIR

Click here to download the sequence:
Link to NCBI Protein BLAST