Transcript Information: R_Transcript_446453.p1


Annotated TAIR IDAT1G16290.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic transglycosylase-like, catalytic (InterPro:IPR008258); Has 171 Blast hits to 155 proteins in 40 species: Archae - 0; Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:5570938-5573538 | Reverse length=419
E-Value8.7E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.15105252098056
Replicate 30
Condition 2: 8 Hour
Replicate 10.17615730177874
Replicate 20.48260896060113
Replicate 30.5223485070615
Condition 3: 24 Hour
Replicate 10
Replicate 20.31734185454068
Replicate 30.15746550134459


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_446453.p1 GENE.R_Transcript_446453~~R_Transcript_446453.p1 ORF type:3prime_partial len:139 (+),score=23.70 R_Transcript_446453:239-652(+)
ATGGCAATTAGCTTTAGATATTGGGATGATTGTGCTGACCCGTTTGATATTGGAGCATTATGGATGAATCTCAAAGTTAGAGCTGAATGGATTGAAGCTGGGGAAACTAAGGACCAAAAGGTTCACTTGTCAAGGGATCCTGATGGCCAACCATTCCTCACCCAGACAGAGATGAGGGCTGTCGCAGAAATTGTTGTTCGCAGGCATTTTCACTCCCAAATAGATTTGGATATGATTTGTGCTGTTGCTGAATTAGAAAGTGATAGACAACTATTGGCAACACGATATAAAAAGAAAACAAATGTCACTACCTTGGGGCTCATGCAAATTTCACCTCAAACTGCTAGTTGGTTGTTCAGAGAACATGGATATCGAGCTTACGCTGTTGATGGAAATACAAATATCTTATATAGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_446453.p1 GENE.R_Transcript_446453~~R_Transcript_446453.p1 ORF type:3prime_partial len:139 (+),score=23.70 R_Transcript_446453:239-652(+)
MAISFRYWDDCADPFDIGALWMNLKVRAEWIEAGETKDQKVHLSRDPDGQPFLTQTEMRAVAEIVVRRHFHSQIDLDMICAVAELESDRQLLATRYKKKTNVTTLGLMQISPQTASWLFREHGYRAYAVDGNTNILYR

Click here to download the sequence:
Link to NCBI Protein BLAST