Transcript Information: R_Transcript_45162.p1


Annotated TAIR IDAT3G16010.1
Annotated Gene NamePentatricopeptide repeat (PPR-like) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:5434142-5436244 | Forward length=642
E-Value5.2e-309
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 18.9255831083609
Replicate 24.1266313711278
Replicate 36.4470220592945
Condition 2: 8 Hour
Replicate 15.466969846712
Replicate 26.8910893724408
Replicate 311.045083820896
Condition 3: 24 Hour
Replicate 18.6633234821525
Replicate 26.2767324830102
Replicate 38.3971697226461


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45162.p1 GENE.R_Transcript_45162~~R_Transcript_45162.p1 ORF type:complete len:636 (+),score=122.79,PPR_2|PF13041.2|2.9,PPR_2|PF13041.2|5e-05,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|6.8e-10,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|6.3e-18,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.085,PPR_2|PF13041.2|5.4e-12,PPR_2|PF13041.2|2.7e-14,PPR_2|PF13041.2|1.6e-08,PPR_2|PF13041.2|1.1e-11,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|2.5e-08,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|1.3e-06,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|2.4e-11,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|0.0008,PPR_1|PF12854.3|5.9e-08,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|3.8e-06,PPR_1|PF12854.3|1.2e+02,PPR|PF01535.16|6,PPR|PF01535.16|0.58,PPR|PF01535.16|0.0002,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.035,PPR|PF01535.16|5.7e-05,PPR|PF01535.16|0.0004,PPR|PF01535.16|0.72,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|0.00041,PPR|PF01535.16|2.6e-07,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0029,PPR|PF01535.16|8.4e-08,PPR_3|PF13812.2|8,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|6.3e-06,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|4.2e-06,PPR_3|PF13812.2|4.8e-05,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.6e+04,TPR_12|PF13424.2|12,TPR_12|PF13424.2|4.6e+02,TPR_12|PF13424.2|7.3,TPR_12|PF13424.2|10,TPR_12|PF13424.2|0.59,TPR_12|PF13424.2|2.8e+03,TPR_12|PF13424.2|3.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|42,TPR_14|PF13428.2|57,TPR_14|PF13428.2|5.9e+02,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|5.6e+02,TPR_14|PF13428.2|2.5e+03 R_Transcript_45162:315-2222(+)
ATGATGTTCAGGCCAGCTGTTGGGAAACGAACAATATCAACTTTTCCAAGTTTATGTCAGAGAATTAAGCAAACAGAAAATGAGATAGTTAAAATGTTTCTTGTGCAAAAATTGACAACTGACTCTCATAACTCGTCATTGAGTCGGAAGAATTCCTCTCGAATGTTGGATGAGAGATTTATAAGGATTTTGAAGATATTTAAGTGGGGACCTGATGCAGAAAAGGCTGTAGAAGTACTTAAGCTGAAGGTAGATCATAGATTGGTACGTGAGGTCTTAAAAATAGTAGATGTTGATGTAAATGTGAAGTTACAGTTTTTCAAGTGGGCAGGGAAGAGGAAGAACTTTGTGCATGACTCTACTACTTACATGTCTTTGATCTATTGTTTGCTTGAAGCTGGGTTATTTGGTGAAGTATGGAAGACAGTCCAAGAATTTGTTCGAAGTCCCTGTCTTATGAGCTCATCTGAATTTTCTACTATTGTCAGAATTTTAGGCCAGGCTAAGATGGTGAATAAAGCTGTCTCAGTTTTCTATCAGATCAAAGGACGAAAGTGCAAACCAACAACTAGCACTTACAACTCCATTATTTTGATGTTGATGCAAGAAGGTCACTATGAAAAGGTGCATGAGGTCTATGATGAAATGTGCAATGATGGTGACTGCTTTCCTGATACAATAACATATGGTGCTTTGATACAAGCATTCGGAAAACTGGGTCGTGATGATTCTGCTATAAGGCTGTTTGATGAGATGAAGGAGAATGGGTTGCTTCCGAATGCAAAGATTTATACAACAATACTGGCAATTTTGTTCAAGCTGGCAAAGGTTGATAAGGCGTTAGCTCTGGTCATAGAAATGAAAGATCAGGGCTGTGCACTAACTGTCTATACCTACACTGAATTGATAAAAGGACTAGGAAAAGTGGGCAGGGTGGATGATGCTTACAGTACGTTTTTGAATATGTTAAAAGAGGGTTGCAAGCCAGATGTTGTTTTGATAAACAATCTAATAAACATCTTAGGTAAATCTGGCCGCTTGGCTGATGCTCTTAAGCTGTTTGAAGACATGGAATCTTTGCAATCTGTGCCAACTGTGGTTACCTATAACACAGTAATTAAATCTTTATTTGAAGCAAATGCCCCAGCTTCTAAGGCTTGGGAATTATTTGAGAAAATGAAGGCGATTGGGATTGCCCCTAGTTCTTACACTTATTCAATTCTGATCGATGGCTTTTGCAAGAAGAACAGGGTTGAGACAGCTTTGCTGCTTCTTGAAGAGATGGATGAGAAGGGTTTCCCTCCTTGTCCTGCAGCATATTGCAGTTTGATTAACAGCCTTGGGAAAACAAAACGTTATGATGCTGCAAAGGAGTTGTTCCAAGAGCTGAGGGAAAATTGTGGTTCCTCGAGTGCTAGAGTATATGCTGTAATGATAAAGCACTTTGGTAAAAGCGGCTCCCTGGATGAAGCTGTAGATCTGTTTAATGAGATGAAGAAACGTGGCTGTACTCCTAATGTTTATGCGTATAATGCGCTGATGTCTGGGCTAGTGAGGGCTGGCATGATAAATGAAGCACAGACCCTACTTCGAACTATGGAAGAAAATGGCTGTCCACCAGATATAAATTCACACAATATAATTTTAAATGGCCTAGCTAAGGCAGGTGGTCCACAGCGGGTGATAGAAATGTTCGAGAAGATGAAGAATTCAACAATTAAGCCAGATGCTGTTTCTTACAACACTGTTCTTAGTTGCTTTAGTCGAGCTGGTATGTTTGAGGAATCTGTGAGGTTGATGAAAGAGATGGACAGAAAAGGTTTCAAGTATGACTTAATTACATACTCATCAGTGCTTGAAGCGGTTGGAACAATTGATGATGACCCTACAGCCACAACTACTTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45162.p1 GENE.R_Transcript_45162~~R_Transcript_45162.p1 ORF type:complete len:636 (+),score=122.79,PPR_2|PF13041.2|2.9,PPR_2|PF13041.2|5e-05,PPR_2|PF13041.2|2e-10,PPR_2|PF13041.2|7e-11,PPR_2|PF13041.2|6.8e-10,PPR_2|PF13041.2|3.2e-08,PPR_2|PF13041.2|2.4e-12,PPR_2|PF13041.2|6.3e-18,PPR_2|PF13041.2|3.8e-08,PPR_2|PF13041.2|0.085,PPR_2|PF13041.2|5.4e-12,PPR_2|PF13041.2|2.7e-14,PPR_2|PF13041.2|1.6e-08,PPR_2|PF13041.2|1.1e-11,PPR_1|PF12854.3|2.6e+03,PPR_1|PF12854.3|1.2e+02,PPR_1|PF12854.3|0.001,PPR_1|PF12854.3|2.5e-08,PPR_1|PF12854.3|0.033,PPR_1|PF12854.3|1.3e-06,PPR_1|PF12854.3|1.6e-07,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|2.4e-11,PPR_1|PF12854.3|0.17,PPR_1|PF12854.3|0.0008,PPR_1|PF12854.3|5.9e-08,PPR_1|PF12854.3|0.00014,PPR_1|PF12854.3|3.8e-06,PPR_1|PF12854.3|1.2e+02,PPR|PF01535.16|6,PPR|PF01535.16|0.58,PPR|PF01535.16|0.0002,PPR|PF01535.16|1.9e-07,PPR|PF01535.16|0.035,PPR|PF01535.16|5.7e-05,PPR|PF01535.16|0.0004,PPR|PF01535.16|0.72,PPR|PF01535.16|5.3e-08,PPR|PF01535.16|0.00041,PPR|PF01535.16|2.6e-07,PPR|PF01535.16|1.7e-06,PPR|PF01535.16|0.0029,PPR|PF01535.16|8.4e-08,PPR_3|PF13812.2|8,PPR_3|PF13812.2|0.075,PPR_3|PF13812.2|1.4e-05,PPR_3|PF13812.2|0.008,PPR_3|PF13812.2|0.0035,PPR_3|PF13812.2|0.0023,PPR_3|PF13812.2|6.3e-06,PPR_3|PF13812.2|6.9e-05,PPR_3|PF13812.2|1.8,PPR_3|PF13812.2|4.2e-06,PPR_3|PF13812.2|4.8e-05,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.0014,PPR_3|PF13812.2|1.6e+04,TPR_12|PF13424.2|12,TPR_12|PF13424.2|4.6e+02,TPR_12|PF13424.2|7.3,TPR_12|PF13424.2|10,TPR_12|PF13424.2|0.59,TPR_12|PF13424.2|2.8e+03,TPR_12|PF13424.2|3.1e+03,TPR_14|PF13428.2|1.6e+04,TPR_14|PF13428.2|42,TPR_14|PF13428.2|57,TPR_14|PF13428.2|5.9e+02,TPR_14|PF13428.2|3.8e+02,TPR_14|PF13428.2|5.6e+02,TPR_14|PF13428.2|2.5e+03 R_Transcript_45162:315-2222(+)
MMFRPAVGKRTISTFPSLCQRIKQTENEIVKMFLVQKLTTDSHNSSLSRKNSSRMLDERFIRILKIFKWGPDAEKAVEVLKLKVDHRLVREVLKIVDVDVNVKLQFFKWAGKRKNFVHDSTTYMSLIYCLLEAGLFGEVWKTVQEFVRSPCLMSSSEFSTIVRILGQAKMVNKAVSVFYQIKGRKCKPTTSTYNSIILMLMQEGHYEKVHEVYDEMCNDGDCFPDTITYGALIQAFGKLGRDDSAIRLFDEMKENGLLPNAKIYTTILAILFKLAKVDKALALVIEMKDQGCALTVYTYTELIKGLGKVGRVDDAYSTFLNMLKEGCKPDVVLINNLINILGKSGRLADALKLFEDMESLQSVPTVVTYNTVIKSLFEANAPASKAWELFEKMKAIGIAPSSYTYSILIDGFCKKNRVETALLLLEEMDEKGFPPCPAAYCSLINSLGKTKRYDAAKELFQELRENCGSSSARVYAVMIKHFGKSGSLDEAVDLFNEMKKRGCTPNVYAYNALMSGLVRAGMINEAQTLLRTMEENGCPPDINSHNIILNGLAKAGGPQRVIEMFEKMKNSTIKPDAVSYNTVLSCFSRAGMFEESVRLMKEMDRKGFKYDLITYSSVLEAVGTIDDDPTATTTF*

Click here to download the sequence:
Link to NCBI Protein BLAST