Transcript Information: R_Transcript_453867.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-20
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8155907080485
Replicate 21.8979706591004
Replicate 34.4648725823009
Condition 2: 8 Hour
Replicate 13.6659628310847
Replicate 22.9688176455811
Replicate 34.4609890507731
Condition 3: 24 Hour
Replicate 13.4371858278766
Replicate 23.8004824641955
Replicate 33.5861211068928


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_453867.p1 GENE.R_Transcript_453867~~R_Transcript_453867.p1 ORF type:complete len:354 (+),score=67.81,UBN2_3|PF14244.2|1.1e-34 R_Transcript_453867:452-1513(+)
ATGTCTTCAGGAAGAAATACAACCTTCCATTTTCAAGATTTGCAGAATCCACTTTTTGTTCATCCGTCTGATGGTCCTAATTCTGTCACTGTAAGTAACAAGTTAACTGGTACAAGCAATTATAGAGCATGGAGAAGGTCTATGGAGCTCAATCTATCTACCAAAAGGAAAACGGGTTTTGTCAATGGTACTATGGTTAAGTCTACATCTGATGTAGTTCAAGCAGAACAATGGGAAACTTGCAACAACTTGGTAATCTCTTGGTTACTTAACTCTGTGTCTGATTCCATTACTCAATCTGTGTTTTATATGGTCATAGTTAAAGAAATCTGTAAAAATTTGGAGACTAGATTCAATGTTTGTAGTGGTGCTCGAATGTACAAGTTACATAGAGATTCTTATGAGCTGAAGCAATTAGGAACTACAATCAGTGAATATTATACCAAGTCTAAATCTGTATGGGAGGAACTAGATGTCTTGACACAATATCCTATTATTACTGATGTTAATGCTGAAATTGTGGCTTTTATTGAACATCTACATAGACAAGAAGAAGAAGCTCATTTGTTTGAAATTCTGTATCATTTGGATGAAATTTATGGACATCAGAAAAGTAATATTCTTGTCATGAACCCTTCACCAAATGTTGAAGCTGCATGTGCTATTTTAGAAGAGGAAGAATCTCATAAGGATATTCTTGACTCTAGTTCATTTTCAACTAAATCAACAACATTATTGAGCAAGAATCCTAAGATCATTTGTGGGAAAGGTGGAAACAAGGGACATGACAAAAATAGATGTTGGCAGCTCATTGGTTATCCAGCTTGGCATCCTCTAGCAAAGAAATTTCCTCAAAGAAAGTTTATTAACTCAACTCAAAGGTTTAATAATGGTGTTTCTAACTCATGGGGAGTGTCAAGAGATCATTCTCCAGGGGGAGTTCATAGAGGTGGTTATAAAGGAAATTTTAAAGGCGGTAAACCAAGGGAAGCTTATAATGCTGAATTGGTGAATTCATCTTCACCTTCTTCTTCAGGAATGATTGCCTTCACTGATGAATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_453867.p1 GENE.R_Transcript_453867~~R_Transcript_453867.p1 ORF type:complete len:354 (+),score=67.81,UBN2_3|PF14244.2|1.1e-34 R_Transcript_453867:452-1513(+)
MSSGRNTTFHFQDLQNPLFVHPSDGPNSVTVSNKLTGTSNYRAWRRSMELNLSTKRKTGFVNGTMVKSTSDVVQAEQWETCNNLVISWLLNSVSDSITQSVFYMVIVKEICKNLETRFNVCSGARMYKLHRDSYELKQLGTTISEYYTKSKSVWEELDVLTQYPIITDVNAEIVAFIEHLHRQEEEAHLFEILYHLDEIYGHQKSNILVMNPSPNVEAACAILEEEESHKDILDSSSFSTKSTTLLSKNPKIICGKGGNKGHDKNRCWQLIGYPAWHPLAKKFPQRKFINSTQRFNNGVSNSWGVSRDHSPGGVHRGGYKGNFKGGKPREAYNAELVNSSSPSSSGMIAFTDE*

Click here to download the sequence:
Link to NCBI Protein BLAST