Transcript Information: R_Transcript_45470.p1


Annotated TAIR IDAT5G01960.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:370811-372775 | Forward length=426
E-Value6.6E-216
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.379675382444
Replicate 221.443030212389
Replicate 326.269641626226
Condition 2: 8 Hour
Replicate 126.986549026964
Replicate 234.159815238237
Replicate 339.856302468594
Condition 3: 24 Hour
Replicate 129.747456599302
Replicate 224.120006531397
Replicate 332.086443679303


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45470.p1 GENE.R_Transcript_45470~~R_Transcript_45470.p1 ORF type:complete len:470 (+),score=73.53,zf-C3HC4_3|PF13920.2|3e-10,zf-RING_2|PF13639.2|3.6e-10,zf-C3HC4|PF00097.21|2.4e-08,zf-C3HC4_2|PF13923.2|9.4e-08,zf-RING_5|PF14634.2|1.8e-07,zf-rbx1|PF12678.3|1.1e-05,zf-RING_UBOX|PF13445.2|1.4e-05 R_Transcript_45470:692-2101(+)
ATGGAAGGGGGAGGAGGTAGTACGGAGAATCATCACAGAGAAAGAGGAACGTCAGGGGGGAATTCGTCGAGTTCGTCATCGTCACGGCGGTATAGAGTTCAATTATCGGCTTCGAATTTCATACGCTCTCCGATTTCGGCTCTTCTAGAATATTCTGGACTTCTACGCCCTAGGTCATCTTCTAGCAATCATCATGAGTCGGAATCACTAATCGCTGCCCCTCCGCCACTTCACGATTCGTCTTCTTCTTCTCCTTCTACTACTACTAGCAATGGTGGGGGTGGTGAGGTGTCGATTAGGATAATTGGTGCCAGTGAACCTGATAGAGTGTCGGACCAGCCGTGTCCGAGCGAGGTGAGTTTGCAGCAGCCTGTTCTTGCTTCCGTTTCCTCAACGGCGTCGTTAGATGGCCAGGATAGGAGTAATGGAGGTGGTGATGGGGTTTCGCATTTCTCGAGTTCGAGTGTTGATGCTGAGGCTGCTGATGGTGGCGGTGGGACGAATAATAACAGGGATACGACTTATCAACGCTATGATATTCAACAGGCTGCTCGCTGGATCGAGCAGGTCCTCCCCTTTTCTTTGCTTCTCCTGGTCGTCTTTATTCGCCAGCATTTGCAAGGCTTCTTTGTTACCATCTGGATTGCTGTTGTCATGTTCAAGTCTAATGACATTCTACGCAAACAAACTGCTCTCAAGGGAGAGAGGAAGATTCCTGTTTTAATCGGCATTTGCATCTTGTTCACACTTCATGTAGCTGGGGTTTATTGGTGGTACCGAAATGATGACCTCCTCTATCCACTGATTATGCTCCCTCCAAAAGCTATACCTCCCTTCTGGCATGCTGTTTTTATCATTATGGTCAATGATACCTTGGTTCGCCAGTCAGCAATGGTCGTAAAGTGCATGTTACTCATGTATTACAAAAATAGCAGAGGAAGAAATTACCGTAGGCAGGGCCAAATGCTGACTTTGGTGGAGTATCTGTTGCTTCTGTACCGAGCATTGTTGCCAACTCCAGTTTGGTATAGGTTTTTCCTAAACAAGGAATATGGAAGTCTCTTTTCGTCACTAATGACTGGCCTATACTTGACATTTAAGCTCACCTCTGTTGTTGAGAAGGTTCAATCATTCTTTGCTGCAGTGAAGGCATTGTCCCGCAAAGAGGTTCATTATGGAGCTTATGCAACTTCAGAGCAGGTTACTGCAGCAGGGGATATGTGTGCTATTTGTCAGGAGAAGATGCATGCTCCAATTCTACTTCGCTGCAAACACATATTTTGTGAAGATTGTGTCTCGGAATGGTTTGAGAGGGAGCGAACATGCCCCTTGTGCAGGGCTTTGGTGAAGCCTGCAGATCTGAAATCATTTGGTGATGGTTCAACGAGTTTATTTTTCCAGCTGTTCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45470.p1 GENE.R_Transcript_45470~~R_Transcript_45470.p1 ORF type:complete len:470 (+),score=73.53,zf-C3HC4_3|PF13920.2|3e-10,zf-RING_2|PF13639.2|3.6e-10,zf-C3HC4|PF00097.21|2.4e-08,zf-C3HC4_2|PF13923.2|9.4e-08,zf-RING_5|PF14634.2|1.8e-07,zf-rbx1|PF12678.3|1.1e-05,zf-RING_UBOX|PF13445.2|1.4e-05 R_Transcript_45470:692-2101(+)
MEGGGGSTENHHRERGTSGGNSSSSSSSRRYRVQLSASNFIRSPISALLEYSGLLRPRSSSSNHHESESLIAAPPPLHDSSSSSPSTTTSNGGGGEVSIRIIGASEPDRVSDQPCPSEVSLQQPVLASVSSTASLDGQDRSNGGGDGVSHFSSSSVDAEAADGGGGTNNNRDTTYQRYDIQQAARWIEQVLPFSLLLLVVFIRQHLQGFFVTIWIAVVMFKSNDILRKQTALKGERKIPVLIGICILFTLHVAGVYWWYRNDDLLYPLIMLPPKAIPPFWHAVFIIMVNDTLVRQSAMVVKCMLLMYYKNSRGRNYRRQGQMLTLVEYLLLLYRALLPTPVWYRFFLNKEYGSLFSSLMTGLYLTFKLTSVVEKVQSFFAAVKALSRKEVHYGAYATSEQVTAAGDMCAICQEKMHAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPADLKSFGDGSTSLFFQLF*

Click here to download the sequence:
Link to NCBI Protein BLAST