Transcript Information: R_Transcript_45542.p1


Annotated TAIR IDAT5G57160.1
Annotated Gene NameDNA ligase IV
Annotated Gene Symbol(s)ATLIG4, LIG4
Annotation TypeOrtholog
Chromosome Positionchr5:23155150-23161688 | Reverse length=1219
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.4077359971366
Replicate 22.9994714880426
Replicate 33.9603369382958
Condition 2: 8 Hour
Replicate 13.8756036239552
Replicate 24.8097676038264
Replicate 36.305916676563
Condition 3: 24 Hour
Replicate 15.8698938934471
Replicate 24.63661692586
Replicate 35.5252241539164


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45542.p1 GENE.R_Transcript_45542~~R_Transcript_45542.p1 ORF type:complete len:1232 (+),score=274.87,DNA_ligase_A_M|PF01068.17|2.8e+03,DNA_ligase_A_M|PF01068.17|2.3e-42,DNA_ligase_A_N|PF04675.10|6.5e-33,DNA_ligase_A_N|PF04675.10|2.6e+03,DNA_ligase_A_C|PF04679.11|5.9e+03,DNA_ligase_A_C|PF04679.11|3.2e-16,BRCT|PF00533.22|1.9e-11,BRCT|PF00533.22|19,BRCT_2|PF16589.1|6e-07,BRCT_2|PF16589.1|0.015,PTCB-BRCT|PF12738.3|1.1e-09 R_Transcript_45542:103-3696(+)
ATGTCCACCGAATTGAAGTTCAGTGTCCTTGTAAAATTTTTCCAGCACACAAGTGACAACAAATACAAGCCCCAAATAAGACGCAGAAACATCCGCAATTTCCTGCAATATTACTGCAATCCTTCAAACTACTTCGCCGCGATTCGATTAATCCTCCCTTCTCTCGATCGCGAAAGAGGTTCCTATGGCCTCAAGGAGTCAGTCCTTGCTCTCTCTCTCCTCGACGCGCTCGGAATGTCACGTGACTCTCACGACGCCCAAAAACTCATCAATTGGCGAAAAGGCGGCTCAAAAGTAGCCGGAGAACAAGCCGGAAACTTTTCGCAAGTCGCCTTCGACGTCCTTCAACCCCGTCAAGGCTCCATCTCCAGCGACCTCACGATTCGCGAACTCAACGAGCTTCTCGATCGCCTCGCAAACGCTGAAAACCGGTCGCAAAAGACGGAGGTCTTAGGTGAGTTGATTAGAAAGACTAATTGTGAAGAAATGAAGTGGATTATTAAGATTATACTGAAAGACTTGAAATTAGGTATTTCCGAAACTACTGTGTTCAAAGAATTACATCCTGATGCTGAGGATTTGTTTAATGTGACTTGTGATTTACGTCTTGTTTGTGAGAAATTGATTGATCGTAATGTCAGGCATAAGAGACAAGATATTGAGGTAGGTAAAGCGGTTAAGCCACAGCTTGCGAATAAAGCCACGAGCTGTGGACAAGCCTGGAAGAGGCTTCGTGGTAAGGATGTGGTGGTGGAGTGTAAATTTGATGGAGATAGGATTCAAATTCACAAGGATGGGGATAAGGTGAATTTCTTTTCGAGGAATTATATCGATCACCAGGAGTATGAGCATGGGATGAGGGGAGTGATACTGGAGAATGTGCTGGAGGAGAAATGTATACTTGATGGAGAGATGTTGGTTTGGGATAAGAGGGCTAATAGGTTTGCGGAGTTTGGGTCGAATCAAGAGGCTGCTAAGGCTGCTAGGGAAGGAGTTGTGAGTGATAAGGAGCTTTGTTATGTGGCTTTTGATGTGCTTTATGTTGGGGATACGAGTGTGATTCATCGGAGTTTGAGGGAGAGGCATGAGCTTCTTAGGAAGGTGGTGAGGCCGGTGAAGGGTAGGTTGGAGATCTTGTTGCCTAGTGGGAATGGGAAGGGCAATGGTAATGGGGATGTTCTTAATGCTCGTAGACGTCCTGGTGAGCCGTGTTGGTCTATTGTGGCTCACCATTTGGATGATGTCAAGAGGTTTTATAAGGAGACGATTGAGAATAGGGATGAGGGGATTGTGTTAAAGGATTTGGGTTCGAAATGGGATCCAGGTGATCGGAGTGGGAAGTGGTTTAAGTTTAAGCCTGATTATGTTCATGTTGGGTCTGATTTGGATGTGTTGATCATAGGAGGGTATTATGGTTCTGGTCGTCGAGGAGGAGAAGTAGCTCAGTTTTTGGTGGGGCTTGCTGAGAAGCCCTCAACAGATACATTCCCAAGGAGGTTTATCTCGTTCTGTAGAGTTGGTACAGGGCTTTCAGATCAAGAGCTTGATGAACTGGTGACCAAATTGAAGCCTTATTTTAGGAAGTATGAGTACCCAAAGAAGGCTGCTCCAAGTTTTTACCAAGTTACTAATCACTCAAAAGAGAGGCCTGATGTTTGGGTTGAGAGTCCTGAGAAATCTGTGATTGTTGCGATAACAAGTGACGTTCGGACTATAAATTCTGAGGTGTTTTCTGCACCTTATAGTTTGAGGTTCCCTCGAATTGATCGGGTGAGGTATGATAAGCCCTGGCATGAGTGCCTTGATGTTCAGTCGTTTATAGATCTGGTGCATTCAAGCAATGGAACAACAATGAAAGAAGGGGAAGATGATGGAGGACTTTCCATTGACAGGCGGAAAAGGCGTCAGAAAGGTCAAGGGAAAAAGAAAAGTTCGGTTTCTGTTCCTTCCCATTTAGCCTGGACTGATGTTTCCAGTGTAAAGGGGGAGTCAAAAATATTGTCAAATATGGTGTTTCACTTTGTCAATGTGCCGTCGGATCATTCATTGGATTCGTTGCATAAGTTGGTGGTTGAGAATGGAGGCACTTTCTCCATGAATCTGAATGACACCGTTACTCATTGTGTTGGGGCGCAGAGTAGAGGGATCAAGTATGAGGCAGCAAAGCGACGTGGGTATGATGTTATTCACTATTCTTGGGTGTTGGATTGTTGCTCCCAAAAGCAGCTTCTCCCCTTAAGACCAACGCACTATGTCTTCCTTTCAGAGCCCTCGAAGAAGAAGTTGCAAGAGGAGATTGATGAATTCTCAGATTCTTATTATTGGGACCTCAATGTTGCAGAATTGAAAGAGATTTTGTGCACTGTGAATAGCTCGGAAGATGTGAAAACTGTTGAATACTACAGGAAGAAATATAGTCCAAATGAAAAATGGTGTTGTTTTGTTGGCTGCTGCATCTATTTCCACCTCTTTTCAAATACTCCAGCTGCTGATTGGGAAATCTTGTCAAAAATAGCACTGAGAAGGATGAGAGTTGAAGTTTCTGCAGGTGGTGGCAAAGTCATTGACAACCCTTCTCAAGCGACCCATATAGTAGTAGCGGTGACAGCTCCAGGATATGAGCTGAACTTCGAGACTTTGTTGCAGAGTTTCCCAGAGGACCAGGAACGTGTTGTTAGACGGAAAAGAGTTCATGTTGTTGGATCCCAGTGGTTGGATGATTGCTTCAAGGAGGAGAAGAAGTTGCCTGAAGAGGCTTACAACTTAAAGCCTAGTACCATGGAAGAATCAAGCCTTAGTGAAGAAGAGGAGGTTGCAGGTGAAATGGATTGTGGAAGGTTGACAGCTTCCCCCCCTCGTGAAGAACAGCTAGAGAAGCCTGTTCCAGAAGAGCCACCAGACGTTGTGCCCCTTTTCAGAGAATCGAAAAGAAAAAGAGGAAGAGTTGCTGGAACAGGTACTCCAAAAAGGAAAGCCACTGTCAGAAAACCTCCCACGACAAAAAGGGCCAGAGTTGGAAGCAGGCGTGCTAAACTGCGGGAGATTGCTTCTGACGATGAAATGAGCAATGAAGAAAATGATGTACCCGAAAATGCGAGCCCTGAGCTTGAAGTGCATGACCATGTTTTCGAGGAAAGTTCTTTTGGTGACAAGTCAAATGACCAGGAGAGCAACGCAATGTCGAAATCTGGTTCTGAAACTGAGAAAGACGGGTTAGTTCGAGGGTCTGAATCATTACAAAGAAATGAGGAGGCATACATGGAAGAAGAGCATAAACCAAGAGTTGATGAGAAGAGGGATCAAAGCTTAGACACTGCTAGTACAGTTTTGTTCAGTAAACCGGACAAGGAAAGAGGGTACTCTGCTTTAGGGAAATCGGAGACTAAGCTTGATCCATTTCGAGCCGTGTTGGCAGAATTTATGCCCCGTCTAGCAGCAAAGACATTTGAACCTGCAAATCCCGCTCTCGATGACACCTACTTACCACCACCAACGTCAAATGAGGTATCATCTTCTCTTGCACCAGTAAGTGAACCAGTGAAGAAGAAGAAAGTTAGCTACAGGGAACTTGCTAATTCTCTACTTAACGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45542.p1 GENE.R_Transcript_45542~~R_Transcript_45542.p1 ORF type:complete len:1232 (+),score=274.87,DNA_ligase_A_M|PF01068.17|2.8e+03,DNA_ligase_A_M|PF01068.17|2.3e-42,DNA_ligase_A_N|PF04675.10|6.5e-33,DNA_ligase_A_N|PF04675.10|2.6e+03,DNA_ligase_A_C|PF04679.11|5.9e+03,DNA_ligase_A_C|PF04679.11|3.2e-16,BRCT|PF00533.22|1.9e-11,BRCT|PF00533.22|19,BRCT_2|PF16589.1|6e-07,BRCT_2|PF16589.1|0.015,PTCB-BRCT|PF12738.3|1.1e-09 R_Transcript_45542:103-3696(+)
MSTELKFSVLVKFFQHTSDNKYKPQIRRRNIRNFLQYYCNPSNYFAAIRLILPSLDRERGSYGLKESVLALSLLDALGMSRDSHDAQKLINWRKGGSKVAGEQAGNFSQVAFDVLQPRQGSISSDLTIRELNELLDRLANAENRSQKTEVLGELIRKTNCEEMKWIIKIILKDLKLGISETTVFKELHPDAEDLFNVTCDLRLVCEKLIDRNVRHKRQDIEVGKAVKPQLANKATSCGQAWKRLRGKDVVVECKFDGDRIQIHKDGDKVNFFSRNYIDHQEYEHGMRGVILENVLEEKCILDGEMLVWDKRANRFAEFGSNQEAAKAAREGVVSDKELCYVAFDVLYVGDTSVIHRSLRERHELLRKVVRPVKGRLEILLPSGNGKGNGNGDVLNARRRPGEPCWSIVAHHLDDVKRFYKETIENRDEGIVLKDLGSKWDPGDRSGKWFKFKPDYVHVGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAEKPSTDTFPRRFISFCRVGTGLSDQELDELVTKLKPYFRKYEYPKKAAPSFYQVTNHSKERPDVWVESPEKSVIVAITSDVRTINSEVFSAPYSLRFPRIDRVRYDKPWHECLDVQSFIDLVHSSNGTTMKEGEDDGGLSIDRRKRRQKGQGKKKSSVSVPSHLAWTDVSSVKGESKILSNMVFHFVNVPSDHSLDSLHKLVVENGGTFSMNLNDTVTHCVGAQSRGIKYEAAKRRGYDVIHYSWVLDCCSQKQLLPLRPTHYVFLSEPSKKKLQEEIDEFSDSYYWDLNVAELKEILCTVNSSEDVKTVEYYRKKYSPNEKWCCFVGCCIYFHLFSNTPAADWEILSKIALRRMRVEVSAGGGKVIDNPSQATHIVVAVTAPGYELNFETLLQSFPEDQERVVRRKRVHVVGSQWLDDCFKEEKKLPEEAYNLKPSTMEESSLSEEEEVAGEMDCGRLTASPPREEQLEKPVPEEPPDVVPLFRESKRKRGRVAGTGTPKRKATVRKPPTTKRARVGSRRAKLREIASDDEMSNEENDVPENASPELEVHDHVFEESSFGDKSNDQESNAMSKSGSETEKDGLVRGSESLQRNEEAYMEEEHKPRVDEKRDQSLDTASTVLFSKPDKERGYSALGKSETKLDPFRAVLAEFMPRLAAKTFEPANPALDDTYLPPPTSNEVSSSLAPVSEPVKKKKVSYRELANSLLND*

Click here to download the sequence:
Link to NCBI Protein BLAST