Transcript Information: R_Transcript_45663.p1


Annotated TAIR IDAT5G57190.1
Annotated Gene Namephosphatidylserine decarboxylase 2
Annotated Gene Symbol(s)PSD2
Annotation TypeOrtholog
Chromosome Positionchr5:23171531-23175364 | Reverse length=635
E-Value3E-272
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 120.564772644636
Replicate 29.1685168169468
Replicate 311.778133508797
Condition 2: 8 Hour
Replicate 111.247760268772
Replicate 212.934649987529
Replicate 318.872184955034
Condition 3: 24 Hour
Replicate 112.411971393428
Replicate 210.256320769531
Replicate 317.584639871326


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45663.p1 GENE.R_Transcript_45663~~R_Transcript_45663.p1 ORF type:3prime_partial len:529 (+),score=93.54,PS_Dcarbxylase|PF02666.11|3.5e-28,EF-hand_5|PF13202.2|0.046,EF-hand_5|PF13202.2|2.4e-05,EF-hand_7|PF13499.2|0.065,EF-hand_7|PF13499.2|2.4e-08,EF-hand_7|PF13499.2|1.6e+04,EF-hand_1|PF00036.28|0.0079,EF-hand_1|PF00036.28|0.0016,EF-hand_6|PF13405.2|0.31,EF-hand_6|PF13405.2|0.0065,EF-hand_8|PF13833.2|9e-07,C2|PF00168.26|2.2e-06 R_Transcript_45663:267-1850(+)
ATGGGACAAGCACATGCTAAAGGAGCTCCTGACAATGGTGGTTCCGGTTCGAAGTTATCTCATCGGTCGAGATTCCGGCAAAAACTCCGGCGTATTTATCGCCGGAACAGCCACCACTGTTCCGATCATCATCATAATCGTCGTTCCACGTCAGGCGGTTATAAGCTTATCTCTGCTGATGATTTCGCCGGAATCGCTCTTCTCACTCTCATTTCCGCGGAGATGAAATTTAAGGACAAATGGCTGGCGTGTGTTTCGTTAGGAGAGCAAACTTTCCGGACTGATATCTCTGATCAAACAGACAAGCCTGTTTGGAACTCGGAAAAGAAACTTCTTTTGGAAAGTAGTGGGCCTCGTGTTGCAAGAGTATCTGTCTATGAGACCAATGTATTGAGGAAGAACAATATCATAGGGTATTGTGAGATTGATCTGTTTCAATTTCTGACTCAGGATTCAGATTCTGAAGCAGTTGATCTCTTGGATCCATCCTCTCCTAACATTGTTGTCGGTCAACTCTATTTCTCATGTTTTGTTGAGGATCCAGAAGAAACTGAAAAAGGTTTTGCAAGGCGTATACTATCTATTGTGGATTATGACGAAGATGGTCAACTTTCTTTCTCTGAATTCTCTGATTTAATAGATGCATTTGGCAATCAAGTAGCAGCTAAGAAGAAAGAAGAGCTTTTCAAGGCGGCAGATGAAAATGGAGATGGCGTTGTTAGCATGGACGAGTTGTCTGCTCTTATTGCTCTTCAACAAGAAAAGGAACCGTTGATAAACTCCTGCCCTGTATGTGGGGAGATGCTTGAAGCTTCCAATACATTCAGTAGCATGATACATATGACCTTGTGTTTTGATGAAGGGACTGGAAATCAAGTAATGAGTGGAGGTTTCTTAACAGATAAGCAGGCTTCATATGGGTGGTTATTCAAACTAAGCGAATGGGCGCACTTCTCATCTTATGACATTGGTTTGAACTCAGGCTCAAAGTCTACACATATTTTGATTTTTGATCGTAGCACAAAGAGGCTGGTTGAAGAACTTATTGACGGAAAGATTATTTTATCAATGAGGGCCATTTATCAGTCTAAACTGGGGCTGCATTTTATGGACAAAGGTGCAAAAGAAATTCTGCAGGGATTATCTGAGAAGCAAGGTAGAAAAATGAATTCAGCTGATTCTGCGAAAGATATACCTAAGTTCATCGACTTCTTTAAGGATCAGATCAATTTATCTGAAATGAAATATCCATTGGATCATTTTAAGACATTTAATGAATTTTTCATCAGGGAATTGAAGCCTGGGGTAAGACCCATTGCCTGTGTGGATCGTGATGATGTTGCAGTGTGTGCTGCTGATTGCCGTCTAATGGCTTTTAGAACTGTCGAAGAGAGCACCAGATTTTGGATAAAGGGCCGCAAGTTTTCTGTTCAAGGCCTATTGGGAAATGGCATTTCTTCAAGTCCTTTCATTGATGGTACATTAGTGATATTCCGTTTGGCACCTCAGGACTACCATCGGTTTCATGTACCAGTTTCAGGAACCATTGAGCAATTCATTGATATCCCTGGGTCCTTATACACT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45663.p1 GENE.R_Transcript_45663~~R_Transcript_45663.p1 ORF type:3prime_partial len:529 (+),score=93.54,PS_Dcarbxylase|PF02666.11|3.5e-28,EF-hand_5|PF13202.2|0.046,EF-hand_5|PF13202.2|2.4e-05,EF-hand_7|PF13499.2|0.065,EF-hand_7|PF13499.2|2.4e-08,EF-hand_7|PF13499.2|1.6e+04,EF-hand_1|PF00036.28|0.0079,EF-hand_1|PF00036.28|0.0016,EF-hand_6|PF13405.2|0.31,EF-hand_6|PF13405.2|0.0065,EF-hand_8|PF13833.2|9e-07,C2|PF00168.26|2.2e-06 R_Transcript_45663:267-1850(+)
MGQAHAKGAPDNGGSGSKLSHRSRFRQKLRRIYRRNSHHCSDHHHNRRSTSGGYKLISADDFAGIALLTLISAEMKFKDKWLACVSLGEQTFRTDISDQTDKPVWNSEKKLLLESSGPRVARVSVYETNVLRKNNIIGYCEIDLFQFLTQDSDSEAVDLLDPSSPNIVVGQLYFSCFVEDPEETEKGFARRILSIVDYDEDGQLSFSEFSDLIDAFGNQVAAKKKEELFKAADENGDGVVSMDELSALIALQQEKEPLINSCPVCGEMLEASNTFSSMIHMTLCFDEGTGNQVMSGGFLTDKQASYGWLFKLSEWAHFSSYDIGLNSGSKSTHILIFDRSTKRLVEELIDGKIILSMRAIYQSKLGLHFMDKGAKEILQGLSEKQGRKMNSADSAKDIPKFIDFFKDQINLSEMKYPLDHFKTFNEFFIRELKPGVRPIACVDRDDVAVCAADCRLMAFRTVEESTRFWIKGRKFSVQGLLGNGISSSPFIDGTLVIFRLAPQDYHRFHVPVSGTIEQFIDIPGSLYT

Click here to download the sequence:
Link to NCBI Protein BLAST