Transcript Information: R_Transcript_45839.p1


Annotated TAIR IDAT2G44980.2
Annotated Gene NameSNF2 domain-containing protein / helicase domain-containing protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:18552343-18556669 | Reverse length=877
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.8718402025161
Replicate 22.3093573970788
Replicate 33.0593734836612
Condition 2: 8 Hour
Replicate 12.720651660805
Replicate 23.0868557423859
Replicate 34.2374130292261
Condition 3: 24 Hour
Replicate 14.0195487402041
Replicate 23.5397329083643
Replicate 33.6356681185868


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45839.p1 GENE.R_Transcript_45839~~R_Transcript_45839.p1 ORF type:complete len:891 (+),score=184.69,SNF2_N|PF00176.19|2.4e-51,Helicase_C|PF00271.27|2.9e-16,HDA2-3|PF11496.4|2.2e-07 R_Transcript_45839:130-2802(+)
ATGACTTCCAATTGGTACGAGCAGAGACTGAAAGCAGCTGCCAAGATTATCCTCAACGGAGATTCTGACGTCGAAACGCCGTCGTTTGATTGCGAGGAGATTGGAGTCACAGCCACCCTCAAACCCCACCAAGTGGACGGCGTTTCTTGGCTTATCCGTCGCTACCTTCTTGGCGTCAACGTCATCCTCGGAGATGAGATGGGACTGGGAAAGACTTTGCAAGCTGTCACTTTCTTGAGCTATCTCAAAGTTCATCAAAGGTTGCCGGGGCCATACTTAGTCCTATGCCCCTTAAGTGTGACAGATGGCTGGCTGTCAGAAATGAAGAAATTTGCTCCTAAATTAAGAGTGCTTGGTTACATGGGTGAAAAAGAGCACAGACGTATGCTAAGAAGGAAAATATTTGAGCATGTGCAACTGCAGTCTTCGACCTCTGATGCGTCATTGTTACCTTTTGATGTGCTTTTGACTACCTATGATATTGCACTGATCGATCAGGATTTTCTCTCTCAATTTCGATGGCATTATGCTGTTATTGATGAAGCTCAAAGGCTCAAAAATTCTTCAAGTGTTCTGTATGGTGTACTCAAAGAGCGGTATATCATCCCTAGACGTTTGCTGATGACTGGTACACCCATTCAAAATAATCTAACAGAACTGTGGGCATTGATGTATTTCTGCATGCCTTCAATCTTCGGGACATTGGAGCAGTTTGTGAACACATTTAAGTCTGTTGGAGATGCTTCAGCAGGGCATGATAGCGTGCAAGTCAAGGAAAAGCTCCACACATTGAAGTCTATACTTGGGGCTCTTATGCTTCGCAGGACGAAATCCAAGCTTGTTGAATGTGGAAGCCTTGTGCTGCCTCCTCTTACTGAAGTTACAGTGATGGTTCCACTTGTAGCCTTGCAGAAGAGTGTTTATACATCAATCTTGAGGAAAGAGCTCCCTAAACTTCTCGCTTTTGCTTCTGGAACTTCTGGTGTCCAATCATTACAGAATATTGTAATCCAGCTGCGAAAGGCTTGCAGCCACCCTTACCTCTTCCCTGGAATTGAACCTGAACCGTACGAAGAGGGTGAACACCTTGTCCAGGCCAGTGGTAAACTTCTGATGTTGGATCAACTTCTTCAGAAGCTGCACGAGTCCAGACATCGTGTTCTTCTTTTTGCTCAGATGACCCACACACTTGATATATTACAGGATTATCTAGAGTTGAGACATTACACTTATGAGCGCCTGGATGGATCCATTCGGGCAGAGGAACGATTTGCTGCAATAAGAAATTTCAGCTGTCAATCAACTTCTGGGAATATGGATTCAGAATCCGATGGACACGGTCCATTTGTCTTTCTGATATCAACTAGAGCTGGTGGAGTTGGTCTGAATCTCATGGCTGCAGACACGGTTGTATTTTATGAGCAAGATTGGAATCCTCAGGTGGACGAACAGGCTTTGCAGCGGGCACATAGGATTGGGCAGATGAATCATGTTTTGTCGATAACCCTTGTTACAGGACACTCTGTAGAGGAGGTCATCATGCAAAGAGCACTAAGAAAGTTACAGCTTAGTAATGATGTTGTTGGCAATGAAGTTTCAGAGCATGAAGGTAAAGAACTCTCAGGGGCTGATTCTGGCGACTTGAAGTCAATGATATATGGATTGCGTTTATTTGATCCAGAAGAGAGTAGTAAAGAAAAAATGGGTGAACCAAATATGTCAGAATTGAGTATGATGACTGAGAAAGTACTTGCCAAGCGCTGTGGGCAGAAATCAGATGAGGATGTGGGGAAGCTTGAGTCAATTCAAATTAGTCTTAGTGGAAGTGATTTTAGATTGGGGAGGACTGATGCAACTATTGATCTTGATCCTGGTCTTGACGAAGCTTCTTACCGTTCTTGGGTTGAAAGATTCAAGGAGCTAGCAGAATCGAATGATAATCCTTCCTCAGACTTGGAAAGTAGTAGAGTGTCATCTGAGGAAAAATGTCAGAGGCTTGAAGCTGCTCGAAAGAAAGCAGAGGAAAAGAAGTTGGCTAAGTGGCAAACCCTTGGGTATCAATCACTTTCTATCCTTGATCCAGTACTGCCAGCTGATTCTGATATTTTGTCTGATCGCGGTGCTGTAAACTTTGTTTTGGGGGATTGTACGCATCCATCTGATGTGTGTCCATCTGAGCCTACTATTATCTTCAGCTGTGTTGATAACTCGGGAAACTGGGGCCACAGAGGAATGTTTGATGCATTGGCTAGACTCTCCACTAAAGTTCCAAAAGCGTATGAACGAGCATCTAAATTTGGGGACCTTCATCTGGGTGATCTTCATCTCATACGAGTAGATGATGATTGTGATGAGCAGCTTGTGGATGGCAAGAAACGTCGGTGGGTTGCTTTGGCTGTTGTGCAATCATACAGTTCCAGGCGCAAGGTTCCACGCAGTGAAATATCTATCAGTGATTTGGAACGTTGCCTATCAAAAGTGTCATCTGCTGCTCTTCAGAATTCAGCTTCGATCCACATGCCACGAGTTGGGTATCAAGATGGATCAGACCGAGCTGTTTGGTATTCCACTGAGCGTCTTTTACGAAAATATGCCTCCATATTTGGCATTCAGATATATGTGTACTACTACAGAAAGTCCCGAAGTGCTGAAGATGCTATTGCCACGGATTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45839.p1 GENE.R_Transcript_45839~~R_Transcript_45839.p1 ORF type:complete len:891 (+),score=184.69,SNF2_N|PF00176.19|2.4e-51,Helicase_C|PF00271.27|2.9e-16,HDA2-3|PF11496.4|2.2e-07 R_Transcript_45839:130-2802(+)
MTSNWYEQRLKAAAKIILNGDSDVETPSFDCEEIGVTATLKPHQVDGVSWLIRRYLLGVNVILGDEMGLGKTLQAVTFLSYLKVHQRLPGPYLVLCPLSVTDGWLSEMKKFAPKLRVLGYMGEKEHRRMLRRKIFEHVQLQSSTSDASLLPFDVLLTTYDIALIDQDFLSQFRWHYAVIDEAQRLKNSSSVLYGVLKERYIIPRRLLMTGTPIQNNLTELWALMYFCMPSIFGTLEQFVNTFKSVGDASAGHDSVQVKEKLHTLKSILGALMLRRTKSKLVECGSLVLPPLTEVTVMVPLVALQKSVYTSILRKELPKLLAFASGTSGVQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLMLDQLLQKLHESRHRVLLFAQMTHTLDILQDYLELRHYTYERLDGSIRAEERFAAIRNFSCQSTSGNMDSESDGHGPFVFLISTRAGGVGLNLMAADTVVFYEQDWNPQVDEQALQRAHRIGQMNHVLSITLVTGHSVEEVIMQRALRKLQLSNDVVGNEVSEHEGKELSGADSGDLKSMIYGLRLFDPEESSKEKMGEPNMSELSMMTEKVLAKRCGQKSDEDVGKLESIQISLSGSDFRLGRTDATIDLDPGLDEASYRSWVERFKELAESNDNPSSDLESSRVSSEEKCQRLEAARKKAEEKKLAKWQTLGYQSLSILDPVLPADSDILSDRGAVNFVLGDCTHPSDVCPSEPTIIFSCVDNSGNWGHRGMFDALARLSTKVPKAYERASKFGDLHLGDLHLIRVDDDCDEQLVDGKKRRWVALAVVQSYSSRRKVPRSEISISDLERCLSKVSSAALQNSASIHMPRVGYQDGSDRAVWYSTERLLRKYASIFGIQIYVYYYRKSRSAEDAIATD*

Click here to download the sequence:
Link to NCBI Protein BLAST