Transcript Information: R_Transcript_45891.p1


Annotated TAIR IDAT1G19170.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:6616777-6618875 | Forward length=506
E-Value7E-281
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.613069907549
Replicate 212.753951079322
Replicate 315.192278447035
Condition 2: 8 Hour
Replicate 110.168716641315
Replicate 211.319041427873
Replicate 314.963827763501
Condition 3: 24 Hour
Replicate 115.605616896518
Replicate 212.303553513339
Replicate 314.380764649656


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45891.p1 GENE.R_Transcript_45891~~R_Transcript_45891.p1 ORF type:complete len:484 (+),score=73.58,Glyco_hydro_28|PF00295.13|5.3e-49,Pectate_lyase_3|PF12708.3|3.9e-16,Pectate_lyase_3|PF12708.3|0.36,Beta_helix|PF13229.2|8e-05,Beta_helix|PF13229.2|1.3e-05,Beta_helix|PF13229.2|4.2 R_Transcript_45891:505-1956(+)
ATGTTCCATCAACATAGACAAGAATTCAAGAGATGGGTACCTTCATTTTTGTCCAATCACAAAACCCTTTTCACAGTTTTGTGGATCTTGGCTTTTGCCTCTGTGTTTTTGTGGCAAAGAAATATTGTTGATGGGTTGCTTGTTTATAGGAGAGTTCCTGTTAGGCCTATCCCAAAGCTTAGACCTTTTGTGTTTAACGTCACTGATTTTGGGGCAGTTGGTGATGGTTTGACTGATAATACTGCAGCCTTTGAGAGGGCTGTTTCTGCCATTGCTAAGTTGGCTAAAAAGGGTGGTGCTCAGCTTAATATCCCTCCTGGTTTTTGGCTTACTTGTCCTTTTAACTTGACTAGCCATATGACTTTGTTTCTTGCTGAAGATGCTGTCATTCTTGGTGTTAATGATGAGAAGAAGTGGCCTTTGATGCCACCATTGCCATCATATGGTTATGGAAGGGAGCATCCTGGACCTCGATATGGAAGTTTGATTCATGGACAAAATCTCAGAGATATTGTCATCACTGGGAACAATGGTACAATCGATGGACAAGGACAAACATGGTGGAAGAAGTATCGACAAAAACTGCTCAATCACACTAGAGGTCCTCTTGTACAGATCATGTGGTCAAGTGACATTGTCATTTCTAACATCACATTGCGTAATTCTCCTTTCTGGACATTACATCCTTATGACTGCAAGAATGTCACTATTCGGAACGTCACTATTTTGGCTCCTGTAAGAGAGGCTCCAAACACCGATGGTATTGATCCTGATTCCTGTGAAGACATGGTGATCGAGGACTGTTATATCTGTGTCGGAGATGATGGAATAGCAATCAAGAGCGGTTGGGATCAGTATGGTATTGCTTATGGCCGGCCCTCCAAAAACATTCTCATCCGCAATCTTGTTGTTCGCTCTGAGGTTAGTGCGGGTGTATCAATAGGAAGCGAGATGTCTGGTGGAGTCTCAAACGTCACAGTGGAGAATGTCCTAGTCTGGAGTTCCAGACGAGCTATCCGGATCAAAACTGCACCAGGCAGGGGAGGATACGTACGACACATAACCTATCGGAATCTGACATTTGAGACTGTCCGTGTAGGGATCATCATCAAGACGGATTACAATGAACACCCAGACGAGGGTTACGATCCCAAAGCCGTCCCAGCAATCGAGAACATAAGTTTCACTTCAATCCACGGCCAGACAGTTCGTGTGCCTGTAAGAATACACGGGAGCGAGGAAATCCCCGTGAGGAACATCACTTTCCGAGACATGTCTGTAGGACTGCAGTACAAGAAGAAGCACATCTTCCAGTGCGCCTTTGTACAAGGCCGAGTTATGGGGACCATATTCCCAGCCCCATGCGACAATCTTGATTTGTACGACGAAAAGGGAAAACTTGTGAGACGGTCTGCTTCACAGAACATAACAGACATAGATTATGACATTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45891.p1 GENE.R_Transcript_45891~~R_Transcript_45891.p1 ORF type:complete len:484 (+),score=73.58,Glyco_hydro_28|PF00295.13|5.3e-49,Pectate_lyase_3|PF12708.3|3.9e-16,Pectate_lyase_3|PF12708.3|0.36,Beta_helix|PF13229.2|8e-05,Beta_helix|PF13229.2|1.3e-05,Beta_helix|PF13229.2|4.2 R_Transcript_45891:505-1956(+)
MFHQHRQEFKRWVPSFLSNHKTLFTVLWILAFASVFLWQRNIVDGLLVYRRVPVRPIPKLRPFVFNVTDFGAVGDGLTDNTAAFERAVSAIAKLAKKGGAQLNIPPGFWLTCPFNLTSHMTLFLAEDAVILGVNDEKKWPLMPPLPSYGYGREHPGPRYGSLIHGQNLRDIVITGNNGTIDGQGQTWWKKYRQKLLNHTRGPLVQIMWSSDIVISNITLRNSPFWTLHPYDCKNVTIRNVTILAPVREAPNTDGIDPDSCEDMVIEDCYICVGDDGIAIKSGWDQYGIAYGRPSKNILIRNLVVRSEVSAGVSIGSEMSGGVSNVTVENVLVWSSRRAIRIKTAPGRGGYVRHITYRNLTFETVRVGIIIKTDYNEHPDEGYDPKAVPAIENISFTSIHGQTVRVPVRIHGSEEIPVRNITFRDMSVGLQYKKKHIFQCAFVQGRVMGTIFPAPCDNLDLYDEKGKLVRRSASQNITDIDYDI*

Click here to download the sequence:
Link to NCBI Protein BLAST