Transcript Information: R_Transcript_45917.p1


Annotated TAIR IDAT5G66540.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: cytosol, nucleolus, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: U3 small nucleolar ribonucleoprotein complex, subunit Mpp10p (InterPro:IPR012173), Mpp10 protein (InterPro:IPR007151); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:26556653-26559310 | Reverse length=524
E-Value9.2E-155
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 161.198491960103
Replicate 259.412889012542
Replicate 358.297925852982
Condition 2: 8 Hour
Replicate 162.138095231087
Replicate 264.035907365147
Replicate 360.947013761883
Condition 3: 24 Hour
Replicate 178.145918032988
Replicate 265.575489937434
Replicate 368.645380392727


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_45917.p1 GENE.R_Transcript_45917~~R_Transcript_45917.p1 ORF type:complete len:411 (+),score=178.63,Mpp10|PF04006.8|8.8e-92 R_Transcript_45917:1-1233(+)
ATGGAAAATGGGGTAGTTGAAGAAGAAGAAGAAGATGATGATGATGATGATGGAAGTGAGGATGATGATGATGGGGATGATGATGAGGATGAGGAGATAGAGGATGAAGATGGGGTGCCAGAGGTGGAAGACCAGTTTTTGAAGGTGAAGGAATTGGAGAAGTTTTTAGTGAGAGAGGAGAAGAGCGAGTATGGCTCTGAGGATAATATTAACAATAATAAGAAAAGGAAGAAGAAAGCAGGGAAGGCTGCTGACGAGGACGAGGAGGAGAGTGAGGGTCCTGAGGAAGATGATGAGATGCTTTTGTTTGGAGATGATGACGACGACGAGGAGGACGGAGCGGGTGCTGATATCAGATATGATGATTTCTTTGTTCCTAATAAGAAAAAGCCAAAACGGAAACAGAAACGAGCTGACAAATCAGATGATTCAGAGATGGAAGATGAAGATGACGAGCAGAAGGAGGAAAATCTATCTACTTATGAAAAGGAACGTCTAAAGATTCAAGCCAAGATAAAGGAGATGGAACAAGCAAACTTAGACCCTAAAGATTGGACCATGCAGGGGGAGGTAACTGCTGCCAAAAGGCCCAAAGATAGTGCATTGGAAGTTGATCTAGATTTTGAGCACAATATGAGACCACCCCCTGTTATCACAGACGAGGTGACTGAGTCTCTTGAAGAAATTATAAAAAAAAGAATACTTGAGGGGAATTTTGATGATGTTGAAAGGGCTCCGAAATTGCCATCTGCAGCACCCAGGGAAAGAAAGGAGTTGGACGAGAATAAGAGCAAGAAAGGCCTTGCTGAAATTTATGAGGAAGAATATTCTCAGCAAACTGGTCTTGCTTCTGCTCCTGTGTCATTTAACGATGAATTGAAAAAGGAGGCAAGCCAGCTCTTTAAAAGGTTATGCTTGAATTTGGATGCACTTTCCCATTTCCATTTTGCTCCAAAGCCGGTTGTGGAGGACATGTCTGTTCAAACAAATGTTCCAGCTTTAGCCATGGAAGAGATTGCACCAGTGGCAGTGTCAGATGCTGCTATGCTTGCTCCTGAGGAAGTTTTCGCTGGTAAAGGTGATGTCAAGGAGGAAACTGAGTTGACAAAGGAGGACAGGAAGAGGAGGAGAGCAAAGAAGAAAAGAAAAATGAAAGCTATCAATGCGAAAAAATCAGTGAACCGAGCAACACCGAAACCATCACAAACTCTTGCTGAAGGCAAAGGGCATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_45917.p1 GENE.R_Transcript_45917~~R_Transcript_45917.p1 ORF type:complete len:411 (+),score=178.63,Mpp10|PF04006.8|8.8e-92 R_Transcript_45917:1-1233(+)
MENGVVEEEEEDDDDDDGSEDDDDGDDDEDEEIEDEDGVPEVEDQFLKVKELEKFLVREEKSEYGSEDNINNNKKRKKKAGKAADEDEEESEGPEEDDEMLLFGDDDDDEEDGAGADIRYDDFFVPNKKKPKRKQKRADKSDDSEMEDEDDEQKEENLSTYEKERLKIQAKIKEMEQANLDPKDWTMQGEVTAAKRPKDSALEVDLDFEHNMRPPPVITDEVTESLEEIIKKRILEGNFDDVERAPKLPSAAPRERKELDENKSKKGLAEIYEEEYSQQTGLASAPVSFNDELKKEASQLFKRLCLNLDALSHFHFAPKPVVEDMSVQTNVPALAMEEIAPVAVSDAAMLAPEEVFAGKGDVKEETELTKEDRKRRRAKKKRKMKAINAKKSVNRATPKPSQTLAEGKGH*

Click here to download the sequence:
Link to NCBI Protein BLAST