Transcript Information: R_Transcript_460693.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value6E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.11626089780076
Replicate 20.26746879511208
Replicate 30
Condition 2: 8 Hour
Replicate 10.15596092323086
Replicate 20
Replicate 30.11561535426998
Condition 3: 24 Hour
Replicate 10.14622807151404
Replicate 20.14047935599094
Replicate 30.13941213176368


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_460693.p1 GENE.R_Transcript_460693~~R_Transcript_460693.p1 ORF type:3prime_partial len:157 (-),score=12.04 R_Transcript_460693:2-469(-)
ATGATGATCATGGCCATGGAGACTATAGTTAAGCTTATATATCTCCTATCCATTATGAATGTTAAAGTCCCAACACCTTTAACCTATGTTTTTGATAATTCTACAGAGGAAAGATATTATGCTAGGCTTTTAAATCTCAGGCCAATGATTCAAGAAAGTGATATAGCGTGCTTGGATAATCTTAGGATGGATAGAGCATGCTTTCATAAATTGTGTGAGATGCTTAGGAATGTTGGTAGGCTACAAGAAACTAGGAATACAAGTTTGGAGGAAATGGTTGCATTATTTCTATTCACACTTTCTCATGATACAAAAAACCGAAGAACACAACTACATTTTAGAAGAAGTGGAGAGACAATATCTAGACACTTCAATTCGGTTCTACGTGCTGTTCTTAGATGTCACCATGTTTTATTAGGACAAAAAAAGGCAAAAACTGAAACTATTGAAGCTAATCAAATGGGACCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_460693.p1 GENE.R_Transcript_460693~~R_Transcript_460693.p1 ORF type:3prime_partial len:157 (-),score=12.04 R_Transcript_460693:2-469(-)
MMIMAMETIVKLIYLLSIMNVKVPTPLTYVFDNSTEERYYARLLNLRPMIQESDIACLDNLRMDRACFHKLCEMLRNVGRLQETRNTSLEEMVALFLFTLSHDTKNRRTQLHFRRSGETISRHFNSVLRAVLRCHHVLLGQKKAKTETIEANQMGP

Click here to download the sequence:
Link to NCBI Protein BLAST