Transcript Information: R_Transcript_46312.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value7E-41
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.144730430847
Replicate 24.7391649511073
Replicate 34.8431388060437
Condition 2: 8 Hour
Replicate 14.0576576198292
Replicate 26.5165998508598
Replicate 36.2234093555612
Condition 3: 24 Hour
Replicate 16.4281860237572
Replicate 26.0494424385583
Replicate 37.129138098018


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_46312.p1 GENE.R_Transcript_46312~~R_Transcript_46312.p1 ORF type:complete len:350 (+),score=46.38,DDE_Tnp_4|PF13359.2|3.9e-18 R_Transcript_46312:350-1399(+)
ATGTCTGAGTACTTAGTTGAGAGTTGGGCTGTGTTTATATTTGACAAGTCTAGTGGTTGTGAGTTGAGTTGTGCTGTAATGTTGTTGGAAAATGGGATGAATATTTGCCGAAAAAATTGCACAGAAATGGAGTCGAATGCACTGTCTTTGATAAGGAAGAGGAGAAAGCGACAAAGGGAGTGGGTTGTCCTAACAGTTGCGCTTGTTAATATAGCGACAGTGATGTATACAGCACTTCAGAGCTTACGTGCCACTGTTAGTCAGATAAATCACATGCAATATGAGAGAAAAGACAAGAAGCGACATAGAGTAGAAAATCTAGCAATGCTGATTAGAGAAAGTGATGTCATGTGTAAGAAGGAACTTCGAATGGATAGGAAGACCTTTTCTGTGCTATGTGAGATGGTTAGGGACATTGGAGGGTTGCGGGGAACTAGAAACATGCCTTTGGAAGAAATTGTCGCCATGTTTTTATACACATTAGCTCATAATAAGAACAATAGGTCGGTGGCAAGTTATTTTTCTAGGAGTGGAGAATCCGTAAGTAGACATTTCAATCGATGCCTCCTTGCGGTCTTGAAGTTGCATCGTGATTTGATGGTCAAAAGGCCTACACCCATGACTGAAGATTGTGAAGATGATACATGGAGATGTTTCAAGAATTGCTTAGGCGCTTTAGATGGAACTTACATTAAAGTCCGTGTTGGAAATGAGGATAGACCAAGATACCGAACAAAGAATGGCAATCTTGCTATGAATGTGTTAGGTGTGTGTACTCCTAACATGGAATTCGTTTTTGTATCCCCGGGTTGGGAAGGTTCTGCTGATGATGATCGCGTCCTTCAAGATGCTATTTCTAGAACTAACGGTTTAAAGGTGCCTCAAGGTTGTTATTATTTGGTTGATGCCGAATACACTAATTGTGAGGGGTTTCTTGCCCCTTATAGGGGTCACCGGTATCATCTAAAGGAATGGAGTGGTTGGCCACCTATGAGTGCAGAGGAGTGTTTCAACATGAAGCACGCTAAAGCTAGGAATGTAATAAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_46312.p1 GENE.R_Transcript_46312~~R_Transcript_46312.p1 ORF type:complete len:350 (+),score=46.38,DDE_Tnp_4|PF13359.2|3.9e-18 R_Transcript_46312:350-1399(+)
MSEYLVESWAVFIFDKSSGCELSCAVMLLENGMNICRKNCTEMESNALSLIRKRRKRQREWVVLTVALVNIATVMYTALQSLRATVSQINHMQYERKDKKRHRVENLAMLIRESDVMCKKELRMDRKTFSVLCEMVRDIGGLRGTRNMPLEEIVAMFLYTLAHNKNNRSVASYFSRSGESVSRHFNRCLLAVLKLHRDLMVKRPTPMTEDCEDDTWRCFKNCLGALDGTYIKVRVGNEDRPRYRTKNGNLAMNVLGVCTPNMEFVFVSPGWEGSADDDRVLQDAISRTNGLKVPQGCYYLVDAEYTNCEGFLAPYRGHRYHLKEWSGWPPMSAEECFNMKHAKARNVIR*

Click here to download the sequence:
Link to NCBI Protein BLAST