Transcript Information: R_Transcript_46315.p1


Annotated TAIR IDAT5G41980.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16793765-16794889 | Forward length=374
E-Value4E-13
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.5514891657134
Replicate 21.4674833624294
Replicate 32.8325535737178
Condition 2: 8 Hour
Replicate 11.5797332224029
Replicate 21.6830771278312
Replicate 32.146964697035
Condition 3: 24 Hour
Replicate 11.8514360667503
Replicate 21.8972265712325
Replicate 33.4125991178496


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_46315.p1 GENE.R_Transcript_46315~~R_Transcript_46315.p1 ORF type:complete len:186 (+),score=28.38 R_Transcript_46315:128-685(+)
ATGGAGTCGAATGCACTGTCTTTGATAAGGAAGAGGAGAAAGCGACAAAGGGAGTGGGTTGTCCTAACAGTTGTGCTTGTTAATATAGCAACAGTGATGTATACAGCACTTCGGAGCTTACGTGCCACTGTTAATCAGATAAATCGCATGCAATATGAGAGAAAAGACAAGAAGCGTCAGAGAGTAGAAAATCTAGCAATGTTGATTAGAGAAAGTGATGTCATGTGTAAGAAGGAACTTCGAATGGATAGGAAGACCTTTTCTGTGCTATGTGAGATGGTTAGGGACATTGGAGGGTTGCGGGGAACTAGAAACATGCCTTTGGAAGAAATTGTCGCCATGTTTTTATACACATTAGCTCATAATAAGAACAATAGGTCGGTGGCAAGTTATTTTTCTAGGAGTGGAGAATCCGTAAGTAGACATTTCAATCGATGCCTCCTTGCGGTCTTGAAGTTGCATCGTGATTTGATGGTCAAAAGGCCTACACCCATGACTGAAGATTGTGAAGATGATACATGGAGATGTTTCAAGGTATCAAAAGAGAACTTATCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_46315.p1 GENE.R_Transcript_46315~~R_Transcript_46315.p1 ORF type:complete len:186 (+),score=28.38 R_Transcript_46315:128-685(+)
MESNALSLIRKRRKRQREWVVLTVVLVNIATVMYTALRSLRATVNQINRMQYERKDKKRQRVENLAMLIRESDVMCKKELRMDRKTFSVLCEMVRDIGGLRGTRNMPLEEIVAMFLYTLAHNKNNRSVASYFSRSGESVSRHFNRCLLAVLKLHRDLMVKRPTPMTEDCEDDTWRCFKVSKENLS*

Click here to download the sequence:
Link to NCBI Protein BLAST