Transcript Information: R_Transcript_465588.p1


Annotated TAIR IDAT5G03340.1
Annotated Gene NameATPase, AAA-type, CDC48 protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:810091-813133 | Reverse length=810
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.7394257122108
Replicate 20.70916334337316
Replicate 30.16579062192631
Condition 2: 8 Hour
Replicate 10.23629302723518
Replicate 20.080919958412011
Replicate 30.32843686285381
Condition 3: 24 Hour
Replicate 10.11077349687674
Replicate 20.053209309748076
Replicate 30.18481777178321


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_465588.p1 GENE.R_Transcript_465588~~R_Transcript_465588.p1 ORF type:complete len:829 (+),score=178.60,AAA|PF00004.25|1.9e-46,AAA|PF00004.25|2e+03,AAA|PF00004.25|1e-43,CDC48_N|PF02359.14|3.6e-17,CDC48_N|PF02359.14|2.6e+03,CDC48_2|PF02933.13|4.3e-13,AAA_2|PF07724.10|2e-06,AAA_2|PF07724.10|0.0013,RuvB_N|PF05496.8|6.4e-05,RuvB_N|PF05496.8|8.3e-05,AAA_33|PF13671.2|8.1e-06,AAA_33|PF13671.2|0.0099,AAA_16|PF13191.2|0.007,AAA_16|PF13191.2|0.0005,AAA_17|PF13207.2|0.00038,AAA_17|PF13207.2|8.4e+02,AAA_17|PF13207.2|0.043,AAA_5|PF07728.10|0.00027,AAA_5|PF07728.10|0.078,AAA_22|PF13401.2|0.062,AAA_22|PF13401.2|28,AAA_22|PF13401.2|0.12,AAA_22|PF13401.2|2.1e+03,AAA_14|PF13173.2|0.015,AAA_14|PF13173.2|0.054,Mg_chelatase|PF01078.17|0.046,Mg_chelatase|PF01078.17|0.02,TIP49|PF06068.9|0.0019,TIP49|PF06068.9|0.93,AAA_19|PF13245.2|0.038,AAA_19|PF13245.2|0.25,RNA_helicase|PF00910.18|0.3,RNA_helicase|PF00910.18|0.15,IstB_IS21|PF01695.13|0.2,IstB_IS21|PF01695.13|0.2 R_Transcript_465588:146-2488(+)
ATGGACGAATTGGAGTTCTTTCGTGGAGATTGCATCATCGTCAGAGGAAAGAGAAAACGCATGACTTGCTGCATTGTTCTCGCTGATGAGACTTGCCCTCCTAACAAGATCAGAATGAACAAGGTCATCAGAAAGAACCTCAAGGTTAGATTGGCAGATTTCGTCTGGTTGAAGCCTTGCCCTGATATCAAGTTCGGTAAGAGAATCCACGTCTTGCCATTCGATGACTCCATCGAAGGAATCAAGGGTAACTTGTTCGAGGCATACTTGAAGCCATACTTCCTCGAGAGTTATCGTCCAGTCAGAAAGGGAGATACCTTCCTCGTTCGTGGTAACGCAAAGGCAGTCGAATTCAAGGTTGTTGAAACTGATCCAGCAGAATACTGTATCGTCGCACCTGATACCGTCATTCACTGTGAAGGAGACCCAGTCAAGAGAGAAGATGAAGAAAAGCTCGATGATGTCGGTTATGATGATATTGGAGGTATCCGTAACCAACTTAAACAAATTCGTGAGCTTGTCGAACTTCCTCTTCGTCATCCTCAATTGTTTAAGGCTATCGGAGTCAAGCCACCAAAGGGTATCTTGATGTACGGTCCACCTGGTACTGGTAAGACCCTTGTCGCAAGAGCAGTTGCAAACGAAACTGGATCCTTCTTCTTCTTGATCAACGGTCCTGAAATCATGTCCAAGATGGCTGGAGAGTCTGAATCCAATCTCAGAAAGGCATTCGAAGAAGCAGAGAAGAACGCACCAGCAATCATCTTCATTGATGAAATCGACTCGGTCGCACCAAAGAGAGATAAGACCAACGGAGAAGTCGAAAGACGTATTGTCTCCCAATTGCTCACCTTGATGGACGGTATGAAGGCACGTTCCAACGTCATCGTCCTTGCAGCAACCAACAGACCAAACTCCATTGATGGAGCTCTCCGTCGTTTCGGACGTTTCGATCGTGAAATCGAATTGGGAGTCCCAGATGCAACTGGAAGATTGGAAATTCTCGGTATCCACACCAAGAACATGAAGTTGGACCCTAAGGTTGAACTCCAAGATTTGGCAAACAAAACCCACGGTTTCGTTGGAGCTGATTTGGCAGCTCTCTGCTCTGAGGCAGCTTTGAACTGTATTCGTGATCGTATGGAGTTGATCGATTTTGGTGATGATGAAATCGATGCAGAAGTCTTGAACTCTTTGTGGGTCACTCAAGAACACTTCTATGCAGCTTTGGACAAGGCAAATCCTTCTGCACTTCGTGAGACTGTTGTCGAAGTACCAAATGTCAGCTGGAAAGATATTGGAGGTTTGGAAGAAGTCAAGAACGAGCTCATCAAGAAATTGGACTGGCCTCAAAAGTATGGTGACAAGTTTGCACAACTCGGAATGAAGGCTTCCAGCGGTATCTTGATGTACGGTCCACCAGGATGTGGTAAGACCCTCCTCGCAAAGGCATCTGCAAACGAATGTGAGGCAAACTTTATCTCTGTCAAGGGACCTGAATTGTTGACCATGTGGTTCGGAGAGTCCGAAGCTAATGTCAGAGATCTCTTCGACAAGGCTCGTCAAGCAGCTCCATGTATCTTGTTCTTTGATGAAATCGATTCCATTGCAAAGGCAAGAGGAGGATCTCTTGGAGATGCTGGTGGTGCATCCGATAGAGTCATCAATCAACTTTTGACTGAGATGGATGGAGTCCAATCCAAGAAGGGAGTCTTCATTGTAGGAGCAACCAACAGACCTGAACTCCTCGATAAGGCTATCTGCCGTCCAGGACGTCTTGATGCAATGGTCTATGTCCCATTGCCTGACTTGCCAGGACGTAAACAAACCTTCAAGGCAATTATGAGAAAAACCCCTGTAAATGAAGACGTTAATTTTGATGAGCTTGCTTTGAAGTTTGAAGGGTTCTCTGGTGCAGATATCCAAGAATTCTGTAACCGTGCTATGTACTTTGCACTCGAAGAGTCCATCAAGAGAACTGAGGAGTTCACTGAACAAATCGAACAACTCAAGAAGGAAGGAAAGGAAATCCCACCAGAGTTGACTGAAGAGCCTGTCAAGGAAATCAGATGGGAACATTTTGTCAAAGCAGCACCTTTCGCAAGAAAATCTGTCGACGAAATCCAAATCCGTAAGTATCATCAATTCGCAGAGAAGATGAAGGGAACTATGCCTAACCTCGGATTCGGAGATGACATGCCTCAAGGAGCTGGAGGAGGTGTCAACCTTTTGGGAGATCTCGTTCCAAACAACAACAACAACCAAAGAAACACTGGAAATGACAACTTGTTTGGAGGAAACGACAATCAATCAAACGATAATCTTTATGATGATGATATGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_465588.p1 GENE.R_Transcript_465588~~R_Transcript_465588.p1 ORF type:complete len:829 (+),score=178.60,AAA|PF00004.25|1.9e-46,AAA|PF00004.25|2e+03,AAA|PF00004.25|1e-43,CDC48_N|PF02359.14|3.6e-17,CDC48_N|PF02359.14|2.6e+03,CDC48_2|PF02933.13|4.3e-13,AAA_2|PF07724.10|2e-06,AAA_2|PF07724.10|0.0013,RuvB_N|PF05496.8|6.4e-05,RuvB_N|PF05496.8|8.3e-05,AAA_33|PF13671.2|8.1e-06,AAA_33|PF13671.2|0.0099,AAA_16|PF13191.2|0.007,AAA_16|PF13191.2|0.0005,AAA_17|PF13207.2|0.00038,AAA_17|PF13207.2|8.4e+02,AAA_17|PF13207.2|0.043,AAA_5|PF07728.10|0.00027,AAA_5|PF07728.10|0.078,AAA_22|PF13401.2|0.062,AAA_22|PF13401.2|28,AAA_22|PF13401.2|0.12,AAA_22|PF13401.2|2.1e+03,AAA_14|PF13173.2|0.015,AAA_14|PF13173.2|0.054,Mg_chelatase|PF01078.17|0.046,Mg_chelatase|PF01078.17|0.02,TIP49|PF06068.9|0.0019,TIP49|PF06068.9|0.93,AAA_19|PF13245.2|0.038,AAA_19|PF13245.2|0.25,RNA_helicase|PF00910.18|0.3,RNA_helicase|PF00910.18|0.15,IstB_IS21|PF01695.13|0.2,IstB_IS21|PF01695.13|0.2 R_Transcript_465588:146-2488(+)
MDELEFFRGDCIIVRGKRKRMTCCIVLADETCPPNKIRMNKVIRKNLKVRLADFVWLKPCPDIKFGKRIHVLPFDDSIEGIKGNLFEAYLKPYFLESYRPVRKGDTFLVRGNAKAVEFKVVETDPAEYCIVAPDTVIHCEGDPVKREDEEKLDDVGYDDIGGIRNQLKQIRELVELPLRHPQLFKAIGVKPPKGILMYGPPGTGKTLVARAVANETGSFFFLINGPEIMSKMAGESESNLRKAFEEAEKNAPAIIFIDEIDSVAPKRDKTNGEVERRIVSQLLTLMDGMKARSNVIVLAATNRPNSIDGALRRFGRFDREIELGVPDATGRLEILGIHTKNMKLDPKVELQDLANKTHGFVGADLAALCSEAALNCIRDRMELIDFGDDEIDAEVLNSLWVTQEHFYAALDKANPSALRETVVEVPNVSWKDIGGLEEVKNELIKKLDWPQKYGDKFAQLGMKASSGILMYGPPGCGKTLLAKASANECEANFISVKGPELLTMWFGESEANVRDLFDKARQAAPCILFFDEIDSIAKARGGSLGDAGGASDRVINQLLTEMDGVQSKKGVFIVGATNRPELLDKAICRPGRLDAMVYVPLPDLPGRKQTFKAIMRKTPVNEDVNFDELALKFEGFSGADIQEFCNRAMYFALEESIKRTEEFTEQIEQLKKEGKEIPPELTEEPVKEIRWEHFVKAAPFARKSVDEIQIRKYHQFAEKMKGTMPNLGFGDDMPQGAGGGVNLLGDLVPNNNNNQRNTGNDNLFGGNDNQSNDNLYDDDM*

Click here to download the sequence:
Link to NCBI Protein BLAST