Transcript Information: R_Transcript_468228.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value0.0005
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.0897679585273
Replicate 24.2396375840602
Replicate 35.7266843990381
Condition 2: 8 Hour
Replicate 12.5898511001894
Replicate 23.870152626359
Replicate 33.4906943500744
Condition 3: 24 Hour
Replicate 13.7527184891439
Replicate 22.5448375642974
Replicate 32.7359630858622


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_468228.p1 GENE.R_Transcript_468228~~R_Transcript_468228.p1 ORF type:internal len:104 (-),score=3.25,gag_pre-integrs|PF13976.2|1.9e-12,gag_pre-integrs|PF13976.2|8.3e+03 R_Transcript_468228:3-311(-)
ACGCGGAAGATACTTCTAAGATGTGATAGTGATGGTGATCTTTATCATGTCCTGTCATCGACACTTTCATCATCTTCCTCACTATCGGCTCTTCTGACAACCAATAATTCTACTTTCTGGCATCAATGCCTCGGACATCCTTGCACCCCCACTCTTAGGTCCATAGTATCTAGAGGATTAACCACATGTAATAAGGAGTCCAACTCCACTCTTTGTCAAGCTTGTCAGTTAGGTAAACATGTCAAGTTTCCATTTCAATTGTCTTCTAGCCAGTGTAATTCTCCATTTGATGTTATTCATTTTGATTTA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_468228.p1 GENE.R_Transcript_468228~~R_Transcript_468228.p1 ORF type:internal len:104 (-),score=3.25,gag_pre-integrs|PF13976.2|1.9e-12,gag_pre-integrs|PF13976.2|8.3e+03 R_Transcript_468228:3-311(-)
TRKILLRCDSDGDLYHVLSSTLSSSSSLSALLTTNNSTFWHQCLGHPCTPTLRSIVSRGLTTCNKESNSTLCQACQLGKHVKFPFQLSSSQCNSPFDVIHFDL

Click here to download the sequence:
Link to NCBI Protein BLAST