Transcript Information: R_Transcript_46905.p1


Annotated TAIR IDAT1G09570.1
Annotated Gene Namephytochrome A
Annotated Gene Symbol(s)PHYA, FHY2, FRE1, HY8
Annotation TypeOrtholog
Chromosome Positionchr1:3095498-3099216 | Reverse length=1122
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 139.477711815766
Replicate 221.762179701946
Replicate 332.668594632235
Condition 2: 8 Hour
Replicate 134.855323768321
Replicate 243.528122302949
Replicate 347.462263001172
Condition 3: 24 Hour
Replicate 135.192439371294
Replicate 226.548723557786
Replicate 334.038885936563


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_46905.p1 GENE.R_Transcript_46905~~R_Transcript_46905.p1 ORF type:complete len:1124 (+),score=248.08,PHY|PF00360.16|1.3e-58,PAS|PF00989.20|1.1e-19,PAS|PF00989.20|2e-25,PAS_2|PF08446.7|3.1e-39,PAS_2|PF08446.7|2.9e+03,PAS_2|PF08446.7|4.3e+02,GAF|PF01590.22|2.5e-32,PAS_9|PF13426.2|4.8e-06,PAS_9|PF13426.2|0.001,PAS_4|PF08448.6|4.3e-10,PAS_4|PF08448.6|1.8e+02,HATPase_c|PF02518.22|2.3e-09 R_Transcript_46905:456-3827(+)
ATGTCTTCATCAACAACGAGTCAGGGATCCAGCAACTCAGGCCGTGGAAAGCATAGTGCAAGGATTATAGCTCAAACTATTGCTGATGCAAAGCTTCATGCCGATTTCGACAAGTCTAGTAGTGAATTTGACTACTCTAGCTCTGTTCGTGCCAGCTCTGGTGGTGGAAAACCCCAAACAAAATCCGACAAAGTTACCTCATCTTATCTCCTTCAGATACAAAAAGGCAAACTAATTCAGCCCTTTGGATGCTTGCTGGCTCTTGATGAGAAGACTTTCAGGGTCATTGCCTACAGTGAGAATGCCCCTGAAATGCTAACTATGGTCAGTCATGCTGTCCCTAGTGTAGGGGATCATCCAGTTATCGGGATCGGAACTGATCTCAGGACCATATTCACTGCTCCAAGTGCATCTGCATTACAGAAGGCGTTAGGATTTACTGATGTTTCTCTGCTGAATCCAATCTTAGTACATTGCAAAACTTCTGGGAAGCCCTTCTATGCAATTATCCATAGGGTGACTGGAAGCTTAGTCATTGACTTCGAACCAGTGAAGCCGTATGAAGTCCCAATGACAGCTGCAGGCGCTCTACAATCTTACAAACTTGCAGCCAAAGCAATTACTCGTTTGCAGTCTTTGCCAAGTGGAAACCTAGATAGACTTGTTGACACAATGGTTCAAGAGGTGTTTGAGCTAACAGGATATGACAGAGTGATGGCATACAAATTCCATGACGATGATCATGGGGAAGTTGTGTCTGAGGTTACGAAGCCTGGCCTTGACCCATACTTGGGCTTGCATTACCCAGCAACAGATATTCCACAGGCTGCACGCTTTCTGTTTATGAAGAATAAGGTCCGTATGATCTGTGATTGCCGTGCAAAGTTTGTGAAAGTGATCCAAGAGGAGAACCTACCATTCAATTTGACCTTGTGTGGTTCAACACTTAGGGCCCCACACGGTTGCCATGCTCAATACATGGAGAATATGGACTCTATCGGGTCACTGGTCATGGCTGTTGTAGTTAATGATGACGAGGAAGAGACTGCTGGTACAAATCCTGCGCAACCTCAGAAGAGGAAGAAACTATGGGGTTTAGTGGTCTGCCATCATACATCTCCAAGGTTTGTACCATTTCCTCTGCGGTATGCTTGCGAGTTTCTGGCACAAGTCTTTGCCATCCATGTAAATAAAGAGTTAGAATTAGAAAACCAGTACCTTGAGAAGAAGATACTCCGTACTCAAACTCTTCTATGTGATATGCTGATGAGAGATGCTCCACTGGGTATTGTCACTCAGACCCCGAACATAATGGATCTTGTTAAATGTGATGGCGCTGCTCTTCTGTATAATAACAAGGTGTGGAAACTGGGGGTCACTCCTACAGATTACCAAATACGAGATATAGCAGTATGGCTATCACAGGACCATATGGATTCGACAGGGTTGAGCACAGATAGCTTGTATGATGCTGGGTACCCTGGTTCACTTGCTCTTGGTGATTCTGTTTGTGGGATGGCAGCTGTGAGGATAACTTTGAAAGACATGATCTTCTGGTTCCGGTCCCACACTGCTGCCGAAATTAAGTGGGGTGGGGCAAAGCATCAGCCTGGTGAGATGGATGATGGCACAAAGATGCATCCAAGGTCATCATTCAAGGCTTTCCTTGAGGTCGTTAAGAGGAGGAGTGTACCTTGGAAGGATTATGAGATGGATGCTATTCACTCATTACAGCTTATTCTGAGGAATGCTTTTAAGAATATGGAAGCTGCAGATTTGAATACATCCGTAATCCACTCTAAGATCAGTGACCTCAAAATTGATGGCTTGCGAGAGCTTGAGGTAGTGACTGGTGAGATGGTCCGGTTGATTGAAACAGCTTCAGTACCCATTTTTGCAGTTGATGCTGATGGATTGGTTAATGGTTGGAATTCAAAGATTTCTGAGCTGACTGGTCTTCCAGTTGTAGAAGCTGTTGGAAAGCATATCGCCACGCTTGTTGAGGACTCTTCGATTGATATAGTCCAAAATATGTTGCGCTTAGCACTTCAAGGAAAAGAGGAGAAGAACATTCAATTCGAGGTCAAAAGGCATCAGTCAATGGGAGATGCAAGTCCTATCAGCTTAGTAGTGAATGCTTGTGCAAGCAAAGACGTTCATGGAACTGTTGTAGGGGTTTGTTTCATTGCTCAGGACATAACTGGCCAGAAAACAGTCATGGACAAGTTCACACGGATAGAAGGTGATTACAAAGCAGTAGTTCAGAATCCCAATCCCTTGATTCCCCCAATATTTGGAACAGATGAATTTGGCTGGTGTTCAGAATGGAATCCTGCTATGGCAAAGCTTACAGGATGGAACCGGGAGGAGGTTATGGATAAGATGTTACTTGGGGAAGTTTTCGGGACCCAAAGATCATGCTGTCGCCTCAAGAACCAAGAGGCATTTGTCAATCTTGGCATAGTACTGAATGGTGCTATAAGCGGCCAGGAGGCTGAGAAGACTACCATTGGGTTTTTCACACGCAATGGGAAGTATATAGAATGTCTGCTTTGTGTGAGCAAGAAGCTGGATGCAGAAGGTGCCATTACTGGTGTCTTTTGCTTCTTGCAGCTTGCTAGTCAGGACTTGCAGCACGCACTTCATGTACAACGGTTAGCGGAGCAAGCTGCCCTAAAGAGGCTGAAAGCATTAGCTTACATGAAGAGACAGATAAGGAATCCTTTGTTTGGAATAATGTTCTCTAGGAAGATGCTTGAGGGGACTGACATGGGAGAAGAGCAGAGGCTGCTTTTGCATACAAGTGCCCTCTGCCAGCGCCAGCTTAACAAGGTCCTTGATGATTCAGATTTGGATGCCATCATCGATGGCTACCTTGAGCTGGAAATGGTTGAATTTGCAATGCACGACATACTGGTCGCTTCTATTAGCCAAGTTATGATGAAGAGCAACGAGAAGGGCATCCGAATAGTTAATGATTCTTCAGTGGACAGCATGAAGGAGACCTTATATGGGGATAGTTTGAGGCTCCAGCAAGTTCTAGCTGAGTTCCTGTTAACTACAGTGAATTTTACTCCCGCTGGTGGTCAGATTGAACTTGGAGTTCGATTGACGAAAGATCAATTGGGAACGTCTGTTCAGCTTGCCAATTTAGAATTCAGGATATCACACACAGGGGGAGGGATATCGGAAGGATTACTGAGCCAGATGTTTGAGGGTAGGGAAGACTCGTCAGAAGAGGGCATCAGCCTGGTTATAAGCAGGAAGCTTGTGAAGCTGATGAATGGAGATATCCAGTATCTGAGATCTGCTAGGAACTCAACTTTCATCATTTCTGTCGAACTTGCTATGGCTGTGAGATCCATGAGATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_46905.p1 GENE.R_Transcript_46905~~R_Transcript_46905.p1 ORF type:complete len:1124 (+),score=248.08,PHY|PF00360.16|1.3e-58,PAS|PF00989.20|1.1e-19,PAS|PF00989.20|2e-25,PAS_2|PF08446.7|3.1e-39,PAS_2|PF08446.7|2.9e+03,PAS_2|PF08446.7|4.3e+02,GAF|PF01590.22|2.5e-32,PAS_9|PF13426.2|4.8e-06,PAS_9|PF13426.2|0.001,PAS_4|PF08448.6|4.3e-10,PAS_4|PF08448.6|1.8e+02,HATPase_c|PF02518.22|2.3e-09 R_Transcript_46905:456-3827(+)
MSSSTTSQGSSNSGRGKHSARIIAQTIADAKLHADFDKSSSEFDYSSSVRASSGGGKPQTKSDKVTSSYLLQIQKGKLIQPFGCLLALDEKTFRVIAYSENAPEMLTMVSHAVPSVGDHPVIGIGTDLRTIFTAPSASALQKALGFTDVSLLNPILVHCKTSGKPFYAIIHRVTGSLVIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGNLDRLVDTMVQEVFELTGYDRVMAYKFHDDDHGEVVSEVTKPGLDPYLGLHYPATDIPQAARFLFMKNKVRMICDCRAKFVKVIQEENLPFNLTLCGSTLRAPHGCHAQYMENMDSIGSLVMAVVVNDDEEETAGTNPAQPQKRKKLWGLVVCHHTSPRFVPFPLRYACEFLAQVFAIHVNKELELENQYLEKKILRTQTLLCDMLMRDAPLGIVTQTPNIMDLVKCDGAALLYNNKVWKLGVTPTDYQIRDIAVWLSQDHMDSTGLSTDSLYDAGYPGSLALGDSVCGMAAVRITLKDMIFWFRSHTAAEIKWGGAKHQPGEMDDGTKMHPRSSFKAFLEVVKRRSVPWKDYEMDAIHSLQLILRNAFKNMEAADLNTSVIHSKISDLKIDGLRELEVVTGEMVRLIETASVPIFAVDADGLVNGWNSKISELTGLPVVEAVGKHIATLVEDSSIDIVQNMLRLALQGKEEKNIQFEVKRHQSMGDASPISLVVNACASKDVHGTVVGVCFIAQDITGQKTVMDKFTRIEGDYKAVVQNPNPLIPPIFGTDEFGWCSEWNPAMAKLTGWNREEVMDKMLLGEVFGTQRSCCRLKNQEAFVNLGIVLNGAISGQEAEKTTIGFFTRNGKYIECLLCVSKKLDAEGAITGVFCFLQLASQDLQHALHVQRLAEQAALKRLKALAYMKRQIRNPLFGIMFSRKMLEGTDMGEEQRLLLHTSALCQRQLNKVLDDSDLDAIIDGYLELEMVEFAMHDILVASISQVMMKSNEKGIRIVNDSSVDSMKETLYGDSLRLQQVLAEFLLTTVNFTPAGGQIELGVRLTKDQLGTSVQLANLEFRISHTGGGISEGLLSQMFEGREDSSEEGISLVISRKLVKLMNGDIQYLRSARNSTFIISVELAMAVRSMR*

Click here to download the sequence:
Link to NCBI Protein BLAST