Transcript Information: R_Transcript_46959.p1


Annotated TAIR IDAT4G33440.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:16092020-16094732 | Forward length=475
E-Value2.3E-242
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.69679538731
Replicate 26.3417397175757
Replicate 38.1342292688378
Condition 2: 8 Hour
Replicate 18.6949806139197
Replicate 28.8987182837371
Replicate 313.298833087181
Condition 3: 24 Hour
Replicate 111.010376935736
Replicate 29.0921679508094
Replicate 39.7377951464155


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_46959.p1 GENE.R_Transcript_46959~~R_Transcript_46959.p1 ORF type:complete len:490 (+),score=67.62,Glyco_hydro_28|PF00295.13|1.9e-45,Pectate_lyase_3|PF12708.3|1.9e-14 R_Transcript_46959:243-1712(+)
ATGACGATGCAAATGAAAATGGAGGATGAAAAACCATTACTAGGCACAATCATAAATGGAGCCATAATATGGCGCCCAATATCATGGGCTTTTCTTTTATTATTCTTCATAACTCTTGCAGTTTTATCTCTCCCTTTTACAACCAAAACCTTTTCTTCACCACCACCACCATGGCATTTTCCGGGTCAACTACCCATCCGGGTTGACCCGAATAGCTGTTCTGGGTTCTTTCAGGGTGACCCAACAAGGAAGTTTGTCATGTCAATTACAGAATTTGGTGGCATTGGTGATGGTAAAACATCTAACACACAAGCCTTTCAAAAAGCTGTTGATTACTTGAAAAAATTTGATAAAATAGGTGGGTCCCAGTTGATTGTACCAAAGGGTAGATGGGTCACTGGAAGTTTCAATCTTACTAGCAATTTCACCCTTTTTCTTGAAGAGGGTGCCTACATTTTGGGCTCTCAGGACCCAAAAGAGTGGCCTATCATTGAGCCCTTGCCATCTTATGGAAGAGGAAGAGAGAGATTAGGTGGCAGACATATAAGTCTCATCCATGGAAACTCTATCAGCAATGTTGTCATTACAGGACATAATGGCACCATTGATGGACAGGGGAGAATGTGGTGGGATATGTGGTGGAACAGAACACTGGAGCGTACTAGAGGCCATCTTGTAGAGTTTGTTAATTCACAGAACATTATGATCTACAATCTCACATTTCGAAATTCTCCATTTTGGACCATCCATCCTGTGTACTGTAGGAATGTTTTGGTAAAGAATATGACAATTTTGGCTCCTCTAAATGCCCCAAACACAGATGGTGTAGACCCAGATTCAAGCACAGATGTATGCATAGAAGATTGTTATGTCGAGAGCGGGGATGATCTTGTCGCCATAAAGAGTGGGTGGGATCAGTATGGCATTGAAATGGCACGACCCAGCTCAAATATAATAGTGAAAAGAATATCTGGTACAACCCCAACGTGCTCTGGGGTCGGTATAGGCAGTGAGATGTCTGGTGGAATATTTAACATATCTGTAGAGGATATTCATGTTTGGAATTCAGCAGCTGGAGTTCGAATAAAAACAGATGCTGGGAGAGGAGGTTACATAGCAAATATTTCCATCAGCAACCTAATACTGGAAGGAGTAAAAGTACCCATTAAGTTCAGTAGGGGCGCCAATGATCACCCTGACGATAAATGGGACCCTAAAGCTGTTCCTAGAGTCAGTCGGGTTTTCATTAGTAATGTGGTAAGCTTGAAGTCGAAGAAAGCACCTGAAATATTGGGTATCGAAGGCTCACCATATGAAGGCATATGCATGAAAAATGTCAGTATTCTTGGCTTGCATTCATCAGCAAGTTGGCATTGCGAACATGTTTCAGGATTTACAAGCGATGTTTATCCACCTCCATGCCCTCAGCTAGATGTTAACATTAGTACATCGTCATGTGGTCGGTTATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_46959.p1 GENE.R_Transcript_46959~~R_Transcript_46959.p1 ORF type:complete len:490 (+),score=67.62,Glyco_hydro_28|PF00295.13|1.9e-45,Pectate_lyase_3|PF12708.3|1.9e-14 R_Transcript_46959:243-1712(+)
MTMQMKMEDEKPLLGTIINGAIIWRPISWAFLLLFFITLAVLSLPFTTKTFSSPPPPWHFPGQLPIRVDPNSCSGFFQGDPTRKFVMSITEFGGIGDGKTSNTQAFQKAVDYLKKFDKIGGSQLIVPKGRWVTGSFNLTSNFTLFLEEGAYILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNSISNVVITGHNGTIDGQGRMWWDMWWNRTLERTRGHLVEFVNSQNIMIYNLTFRNSPFWTIHPVYCRNVLVKNMTILAPLNAPNTDGVDPDSSTDVCIEDCYVESGDDLVAIKSGWDQYGIEMARPSSNIIVKRISGTTPTCSGVGIGSEMSGGIFNISVEDIHVWNSAAGVRIKTDAGRGGYIANISISNLILEGVKVPIKFSRGANDHPDDKWDPKAVPRVSRVFISNVVSLKSKKAPEILGIEGSPYEGICMKNVSILGLHSSASWHCEHVSGFTSDVYPPPCPQLDVNISTSSCGRL*

Click here to download the sequence:
Link to NCBI Protein BLAST