Transcript Information: R_Transcript_46961.p1


Annotated TAIR IDAT4G33440.1
Annotated Gene NamePectin lyase-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:16092020-16094732 | Forward length=475
E-Value3.1E-107
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.52151317013482
Replicate 20.066654921956502
Replicate 30.43631881135528
Condition 2: 8 Hour
Replicate 10.31093161837772
Replicate 20.42592155887972
Replicate 31.2677315353921
Condition 3: 24 Hour
Replicate 10.36440963853499
Replicate 20.49011686423505
Replicate 30.2084543303514


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_46961.p1 GENE.R_Transcript_46961~~R_Transcript_46961.p1 ORF type:complete len:315 (+),score=41.61,Pectate_lyase_3|PF12708.3|2.2e-12,Glyco_hydro_28|PF00295.13|8e-09 R_Transcript_46961:238-1182(+)
ATGACAACGCAAATGAAAATGGAGGATGAAAAACCATTACTAGGCACAATCATAAATGGAGCCATAATATGGCGCCCAATATCATGGGCTTTTCTTTTATTATTCTTCATAACTCTTGCAGTTTTATCTCTCCCTTTTACAACCAAAACCTTTTCTTCACCACCACCACCATGGCATTTTCCGGGTCAACTACCCATCCGGGTTGACCCGAATAGCTGTTCTGGGTTCTTTCAGGGTGACCCAACAAGGAAGTTTGTCATGTCAATTACAGAATTTGGTGGCATTGGTGATGGTAAAACATCTAACACACAAGCCTTTCAAAAAGCTGTTGATTACTTGAAAAAATTTGATAAAATAGGTGGGTCCCAGTTGATTGTACCAAAGGGTAGATGGGTCACTGGAAGTTTCAATCTTACTAGCAATTTCACCCTTTTTCTTGAAGAGGGTGCCTACATTTTGGGCTCTCAGGACCCAAAAGAGTGGCCTATCATTGAGCCCTTGCCATCTTATGGAAGAGGAAGAGAGAGATTAGGTGGCAGACATATAAGTCTCATCCATGGAAACTCTATCAGCAATGTTGTCATTACAGGACATAATGGCACCATTGATGGACAGGGGAGAATGTGGTGGGATATGTGGTGGAACAGAACACTGGAGCGTACTAGAGGCCATCTTGTAGAGTTTGTTAATTCACAGAACATTATGATCTACAATCTCACATTTCGAAATTCTCCATTTTGGACCATCCATCCTGTGTACTGTAGGTTGGTTCAGCCCTTCACATCTTTTTGTTTGATGGCTGGATGTTTCATGGTTAAACTGATCGTGCCTTGCATATTCTTCCGAATTGACATATTTGCATTTTCTTATTGCCACTTTAATAATGAATTGGGGACACCCGAGAGGAACAGAATTAGCATGCAGAGTATTATGCTTGTTGGTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_46961.p1 GENE.R_Transcript_46961~~R_Transcript_46961.p1 ORF type:complete len:315 (+),score=41.61,Pectate_lyase_3|PF12708.3|2.2e-12,Glyco_hydro_28|PF00295.13|8e-09 R_Transcript_46961:238-1182(+)
MTTQMKMEDEKPLLGTIINGAIIWRPISWAFLLLFFITLAVLSLPFTTKTFSSPPPPWHFPGQLPIRVDPNSCSGFFQGDPTRKFVMSITEFGGIGDGKTSNTQAFQKAVDYLKKFDKIGGSQLIVPKGRWVTGSFNLTSNFTLFLEEGAYILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGNSISNVVITGHNGTIDGQGRMWWDMWWNRTLERTRGHLVEFVNSQNIMIYNLTFRNSPFWTIHPVYCRLVQPFTSFCLMAGCFMVKLIVPCIFFRIDIFAFSYCHFNNELGTPERNRISMQSIMLVG*

Click here to download the sequence:
Link to NCBI Protein BLAST