Transcript Information: R_Transcript_47165.p1


Annotated TAIR IDAT5G16630.1
Annotated Gene NameDNA repair protein Rad4 family
Annotated Gene Symbol(s)ATRAD4, RAD4
Annotation TypeOrtholog
Chromosome Positionchr5:5455325-5459461 | Forward length=865
E-Value7.5E-269
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.7134862265887
Replicate 24.1449805757204
Replicate 35.6257440159763
Condition 2: 8 Hour
Replicate 16.1862055977176
Replicate 26.0434815786988
Replicate 37.1454636402228
Condition 3: 24 Hour
Replicate 16.7173842534645
Replicate 25.8572132893895
Replicate 37.8188745297495


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47165.p1 GENE.R_Transcript_47165~~R_Transcript_47165.p1 ORF type:5prime_partial len:851 (+),score=200.50,Rad4|PF03835.11|1.6e+04,Rad4|PF03835.11|9.5e-25,BHD_3|PF10405.5|4e-24,BHD_1|PF10403.5|1.2e-12,BHD_2|PF10404.5|1.4e+04,BHD_2|PF10404.5|1.6e+04,BHD_2|PF10404.5|2.9e-12,BHD_2|PF10404.5|7.1e+03,Transglut_core|PF01841.15|1.1e-05,Transglut_core|PF01841.15|7.9e+02 R_Transcript_47165:1-2553(+)
GCCCCAATGGACTCCAAACCCAAAACCCGTTCTTCACAACGCAACACTACCACCCGACCCGAACCCAAACCCAAACCCAAACCCAAATCCAGATTCCAGAGCGTCGACATCATCCGACAAAACCAACCCGAAAAATATCGCCAAAACAACGAACCCGAAATCGACGACGATGAATTTGACTGGCAAGACGGTTCATCCATTCCTTCTTCTTCTTCACTTAACAATAATGATGATGAAGGCCTCACCATTGAATTCGACACTTTGCCTGCGTCTTCTAAGAAGAAAAGTATTATTCGTCGGCCCTCTGCTCAAGATAAGGAAGTAGCGGAGCTAGTGCATAAGGTACATTTGCTTTGTTTGATGGCTAGAGGGAGGTTAATTGATGCTGCTTGTGATGATCCGCTTCTTCAGGCTGCCTTATTCTCTCTGTTACCACCTCACTTGTTGAAGATATCAGAAGCCACAAACCTCACTGCTCAGGCTTTGACTCCTCTTGTCTCTTGGTTCCATAGGAATTTCCAAGTTAGAAGCCCCAGCAGTGTGGAAAAACCATTTCATTTGGCTTTAACATCTGCTCTCGAAACACAGGGAGGAAGCTCTGAAGAGGTTGCAGCGCTGTCTGTGGCACTCTTCAGAGCTCTAAATCTGACAACAAGGTTTGTGTCAATTCTTGATGCATCCCCCTTGAAGCCTGAAATGGAAACAGATGAGCCATCTCATCTGGATTTTGAAAGAGCCAGGAAAGATGTATTTAAATCTTCGACACTTATGGTGAGCCAAATGCACAAAGAACAGGCAGATGCAAACCTTTCCGTGTCTGATGGAGAGCCTATCTGTGAAAATTCTCTCAGGACTGTGTCCGAAAATAAGCACAGACGTATGTCAAAAACTGTTGAAGCTAAAGAGACTTTTGCTGCTGATCACATGAATAAGTCAGATCAGTCTGCTGGCGAGACATCCAATGCTTCTGGGGAAGACAATCATCCAAGGAGAAAAAGTGACTTGGAGTTTGAGATGCAGTTGGAAATGGCTTTGTCAGCCACAGCACTGGCAGCCTCCAAAAGGAAGCCTGCAGCTGATGTGAATGGGTCAAAAAGCAGTCCATCAAATGTATCCTCTCCCTTAAAGAAGTTGAAGAGAGTTGCTGATGTGTCCTCAGCATCCTCCAATGTTATATCTACTGCAATTGGTTCGAAAAAAGTTGGGGCTCCATTGTATTGGGCAGAGGTGTTCTGTAGTGGTGAAAACATGTCAGGGAAGTGGGTCCATGTTGATGCTGTTAATGCAATAGTTGATGGAGAGCTGAAATTAGAGGATGCTGCTGCTGCATGCAAAAAGTCTTTGAGATATGTTGTTGCCTTTGCTGGCCGTGGGGTCAAAGATGTGACACGCAGATACTGCTCCAAGTGGTACAAAGTATCTCCAAAACGAGTTAATTCAGAGTGGTGGGATGCCGTGATAGCTCCATTGAAGGAGTTAGAATCTCGTGCGACAGGGGGTATGGTTCCTTTGAATCATCAGGAAATGAGATCATCCGCTGCTAGCCGGGCCACTCTTGAGGACATGGAGTTGGCAACTAGGGCATTAACTGAGCCCCTCCCTACAAGTCAACAGGCCTATAGGAACCATCCATTGTATGCTATTGAAAAGTGGGTTACCAAGTATCAAATTCTGCATCCAAAGGGTCCCGTCCTTGGCTTCTGTTCTGGTCATGCGGTTTATCCTCGAAATTGTGTACAAACACTCCACACTAAAGAAAGATGGCTCCGGGAGGGGCTGCAAATTAGGGTGAATGAGCTTCCTGCGAAGGAGGTGAAGAGTAGCTTTAAGAATCATAAAGGAAAGACTGTTGAAGTAGAGGATTCTGGTGATGGTGGATCCAATGGTGTTATTTCTCTATTTGGAAAGTGGCAAACTGAACCATTATGTTTGCCCCCTGCTATTAATGGAATTGTTCCCAAGAATGAGCGTGGTCAAGTGGATGCATGGTCTGACAAGTGCCTTCCACCTGGCACTGTACATCTGAGGCTACCTAGGTTGGTTCCTGTTGCAAGGAGATTAGGGATTGATTTTGCTCCTGCTATGGTTGGATTTGAATTTCGAAATAGACGTTCAGTCCCTGTCTATGAAGGCATTGTGGTCTGCACTGAATTCAGAGAAGCAATTCTAGAGGCATATGCAGAAGAAGAACAGAGGAGAGAGGAAGAGGAAAAGAAAAGGGAAGAGAGGCAGGCTTTTTCTCGGTGGTACCAACTTCTCTCATCCATGGTTACCCGAAAAAGATTGAATGACTCTTATAGGAGTGAATCAGAAAATGTTCCAAAGCCCTTGAAGTTCAACAACACATCTAAACAAGACGGTACAACTGTGAAGGAGAGTGCTACAACTCACAAAGATAATAAAATAAAGACTAAGATGCGTGATTTGGACAGTATACAATCACAGAATCATGAACATGTCTTTTTGACTGATGATGAAGGCTTCGATGAGGATAGCATGACACAAACTAAAAGATGTCATTGTGGATTATCGATTCAGGTGGAGGAACTCTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47165.p1 GENE.R_Transcript_47165~~R_Transcript_47165.p1 ORF type:5prime_partial len:851 (+),score=200.50,Rad4|PF03835.11|1.6e+04,Rad4|PF03835.11|9.5e-25,BHD_3|PF10405.5|4e-24,BHD_1|PF10403.5|1.2e-12,BHD_2|PF10404.5|1.4e+04,BHD_2|PF10404.5|1.6e+04,BHD_2|PF10404.5|2.9e-12,BHD_2|PF10404.5|7.1e+03,Transglut_core|PF01841.15|1.1e-05,Transglut_core|PF01841.15|7.9e+02 R_Transcript_47165:1-2553(+)
APMDSKPKTRSSQRNTTTRPEPKPKPKPKSRFQSVDIIRQNQPEKYRQNNEPEIDDDEFDWQDGSSIPSSSSLNNNDDEGLTIEFDTLPASSKKKSIIRRPSAQDKEVAELVHKVHLLCLMARGRLIDAACDDPLLQAALFSLLPPHLLKISEATNLTAQALTPLVSWFHRNFQVRSPSSVEKPFHLALTSALETQGGSSEEVAALSVALFRALNLTTRFVSILDASPLKPEMETDEPSHLDFERARKDVFKSSTLMVSQMHKEQADANLSVSDGEPICENSLRTVSENKHRRMSKTVEAKETFAADHMNKSDQSAGETSNASGEDNHPRRKSDLEFEMQLEMALSATALAASKRKPAADVNGSKSSPSNVSSPLKKLKRVADVSSASSNVISTAIGSKKVGAPLYWAEVFCSGENMSGKWVHVDAVNAIVDGELKLEDAAAACKKSLRYVVAFAGRGVKDVTRRYCSKWYKVSPKRVNSEWWDAVIAPLKELESRATGGMVPLNHQEMRSSAASRATLEDMELATRALTEPLPTSQQAYRNHPLYAIEKWVTKYQILHPKGPVLGFCSGHAVYPRNCVQTLHTKERWLREGLQIRVNELPAKEVKSSFKNHKGKTVEVEDSGDGGSNGVISLFGKWQTEPLCLPPAINGIVPKNERGQVDAWSDKCLPPGTVHLRLPRLVPVARRLGIDFAPAMVGFEFRNRRSVPVYEGIVVCTEFREAILEAYAEEEQRREEEEKKREERQAFSRWYQLLSSMVTRKRLNDSYRSESENVPKPLKFNNTSKQDGTTVKESATTHKDNKIKTKMRDLDSIQSQNHEHVFLTDDEGFDEDSMTQTKRCHCGLSIQVEEL*

Click here to download the sequence:
Link to NCBI Protein BLAST