Transcript Information: R_Transcript_47175.p1


Annotated TAIR IDAT1G55900.1
Annotated Gene NameHaloacid dehalogenase-like hydrolase (HAD) superfamily protein
Annotated Gene Symbol(s)TIM50, emb1860
Annotation TypeHomolog
Chromosome Positionchr1:20903163-20905420 | Forward length=376
E-Value1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 119.926149042235
Replicate 219.24660871494
Replicate 318.261760250266
Condition 2: 8 Hour
Replicate 116.936056588511
Replicate 220.311134339077
Replicate 323.950041790788
Condition 3: 24 Hour
Replicate 122.957807227704
Replicate 223.158021835106
Replicate 324.988462850874


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47175.p1 GENE.R_Transcript_47175~~R_Transcript_47175.p1 ORF type:complete len:360 (+),score=39.92,NIF|PF03031.14|1.6e+03,NIF|PF03031.14|4.5e-31 R_Transcript_47175:97-1176(+)
ATGGGTTTACGAGCAGCTATGATCCGATCACGTCAGCTACTCGGATCCGGAACCCGTCAATCCAAACAATCTCTCTCCACCACCACCACCTCCGCCACCGGATCCCAACACTCCGATTTCTCTTCTTCTTCTTCGGCTTCATCGTTGCCGTCCAATTCAAGTGCCGCTAATCCGACGACCAGGAAGCTCCCTCTTTTTCTCAAGGCAGGTCTCTTCGGCGTTTTCGCCGGTGCTCTTGGCGCCGCTTACGCTACCTGTGCATACACCACCAACGAAATGGATGAGAAGACAAAGGCCTTTCGATCATCTATCAATCATTTCGTGGTGGACTCTGGGCCTACAAATGACAAACTTAAACCTCTGTACTCTGCTGTAATGACAGCTCCTGCAAAAGCTGTTGATCTTTACCTTCATGTGAGGAGGTCAATTGAAGAACGTCTGCAGGAATTCGCTGAACCTATGTCTGATAAACTTCTACCGGATATGGAGCCCGTCTATCAACAGATGGGCGTCCTCACGCTTGTTCTGGATTTACGAGAGACTTTAATTCATAATGAGTGGACGCGTGAGACAGGTTGGGCAACTTTTAAAAGACCAGGATTGGATGCATTCTTGGAGCAATTGTCTCAAATTTTTGAGATTGTTGTTTACACCGATGAGACGTTTGTTGATCTTCAGATACAGGAGAAGTTAAATAAAAAAGGTGTCTTCTACTTTCTAACAAGGCCTCACACTAAATACCGGGACGGAAAGCATTACAGGGACATCTCCAAGTTAAATAGAAATCCGTCAAAAGTTCTTTATGTAAGTGGACATGCACTAGAAACATGCCTTCAGCCTGAAAATTGTGTTCCTATCAAACCTTGGAGAAAAGAAGTAGATGATACGACATTGATTGACCTCATTCCGTTTCTTGAATTTGTTGGTATGCATAGACCAGCTGACATAAGAACGGTTTTGGCTTCGTACCATGGAAAGGATATTCCCAGTGAATTCATTGCACGTTCCAGAGAGCATCAAAGGCTCGCCATGGAAAAGAAACAGAAGGCCTTGCGTTGGGGGCGCAGTAGCTGGAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47175.p1 GENE.R_Transcript_47175~~R_Transcript_47175.p1 ORF type:complete len:360 (+),score=39.92,NIF|PF03031.14|1.6e+03,NIF|PF03031.14|4.5e-31 R_Transcript_47175:97-1176(+)
MGLRAAMIRSRQLLGSGTRQSKQSLSTTTTSATGSQHSDFSSSSSASSLPSNSSAANPTTRKLPLFLKAGLFGVFAGALGAAYATCAYTTNEMDEKTKAFRSSINHFVVDSGPTNDKLKPLYSAVMTAPAKAVDLYLHVRRSIEERLQEFAEPMSDKLLPDMEPVYQQMGVLTLVLDLRETLIHNEWTRETGWATFKRPGLDAFLEQLSQIFEIVVYTDETFVDLQIQEKLNKKGVFYFLTRPHTKYRDGKHYRDISKLNRNPSKVLYVSGHALETCLQPENCVPIKPWRKEVDDTTLIDLIPFLEFVGMHRPADIRTVLASYHGKDIPSEFIARSREHQRLAMEKKQKALRWGRSSWN*

Click here to download the sequence:
Link to NCBI Protein BLAST