Transcript Information: R_Transcript_47301.p1


Annotated TAIR IDAT5G40690.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:16290770-16291402 | Forward length=210
E-Value6E-36
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.4371838784952
Replicate 24.408063070825
Replicate 34.0498099617507
Condition 2: 8 Hour
Replicate 13.6525875888156
Replicate 25.6828760480361
Replicate 34.1116908035131
Condition 3: 24 Hour
Replicate 11.775741995513
Replicate 21.8277838859594
Replicate 32.1766778141666


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47301.p1 GENE.R_Transcript_47301~~R_Transcript_47301.p1 ORF type:3prime_partial len:181 (-),score=7.86 R_Transcript_47301:1-540(-)
ATGGAGGACTATAACGCAATAGAGACCCAGTTTCACCGATTTTCAAAAGAATTATCTCTAACAGCCGCACAAAATCCTCAACAAAAAATGAAGAGAGAAGGTCGTCAACACGGATTGGTCCGAACCTTCCATGTTCTACCGGCCCCATTGAACCCGAGGCCCCATACCCGAATAGTCAATCGGGTTGATTCCCCACCCACTGCCGGAATATTCACAAAGGTCTCTCGTAAGCCCAACAACCACTCTAAGTTCACCGGCAAGTGCGACCGTCCTAACTGTACAGCCTGCCATAGACATGCTGGTTGCAAGTCTAAACACAAGGCTAAAGGCACCCAGAAAATTAGATCCTCCGACGCCGTTTTGAATTACAATCATGTCACTTGGCAGGTCATGGATCACTTTTCCGGCCCCACCCGTAAGCTTCCGGTTTCTGGGTACTCCGCTTCTCAGATCCTAGACGAGCTTGCCAACGATTATATGGGCTGTCGTGATGATGATGATGATTATTACGATGATGAGGAGGAGTTATATGAAAATGCA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47301.p1 GENE.R_Transcript_47301~~R_Transcript_47301.p1 ORF type:3prime_partial len:181 (-),score=7.86 R_Transcript_47301:1-540(-)
MEDYNAIETQFHRFSKELSLTAAQNPQQKMKREGRQHGLVRTFHVLPAPLNPRPHTRIVNRVDSPPTAGIFTKVSRKPNNHSKFTGKCDRPNCTACHRHAGCKSKHKAKGTQKIRSSDAVLNYNHVTWQVMDHFSGPTRKLPVSGYSASQILDELANDYMGCRDDDDDYYDDEEELYENA

Click here to download the sequence:
Link to NCBI Protein BLAST