Transcript Information: R_Transcript_473378.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value1E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.34439548971167
Replicate 20
Replicate 30.54025324519227
Condition 2: 8 Hour
Replicate 10.34649808887611
Replicate 20.84380686193153
Replicate 30.25686241443944
Condition 3: 24 Hour
Replicate 10.43316617410762
Replicate 20.20806848009979
Replicate 30.61946334019521


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_473378.p1 GENE.R_Transcript_473378~~R_Transcript_473378.p1 ORF type:complete len:212 (+),score=36.42 R_Transcript_473378:139-774(+)
ATGGTATCAGAGCAGATTTATCCTGATATTTCTGATTGTAAACAGAAAACTGGAGAATCAATTATTGACTACTATGGTCGTTTGAAGAAATTATGGGATGACGTCAACGACTATGATGCGTTGCCTTCTTGCTCATGTAATGGTTGTAAGTTCGGCCTTAATGCAAAGCTCCGTCAACGACGTGCCACTAATCAGGTTCGTGAGTTTCTGATGGGTCTTGAATCTTTTTATGCTAATGTTCGCTCAAGTATTTTAGGGGTCGAGCCTCTGCCTTCTCTTCATTCTGTCTATTCTCGGCTTGTTCAAGAGGAGGAGATGCGCCTCTTGACTGAACGTCGTGCCGCAGAGCCAACTTCCATGGCCTTCGCTGTCAAAGGACCTATGTCACAGGGTTCGAATAATGGGGGGGGGGCTGGTCGTCCTCCGATGAAGTGTACTCATTGTGGTAAGCTTTGGCACCTCGAAGAAAATTGTTGGCAAAAGCACGGGTACCCGGAAGGCAAGGAGCGCAAAGGGCCTAGTGGTCGTGGAAAAGGTGGCTCGGGGTCTTCCAATACTGCTCCTCCACCTAAGGCTAATGCTGTCTTTGGTGAGGCCTCAACATCTACTAACCATGTTTGCTTAAACGGACCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_473378.p1 GENE.R_Transcript_473378~~R_Transcript_473378.p1 ORF type:complete len:212 (+),score=36.42 R_Transcript_473378:139-774(+)
MVSEQIYPDISDCKQKTGESIIDYYGRLKKLWDDVNDYDALPSCSCNGCKFGLNAKLRQRRATNQVREFLMGLESFYANVRSSILGVEPLPSLHSVYSRLVQEEEMRLLTERRAAEPTSMAFAVKGPMSQGSNNGGGAGRPPMKCTHCGKLWHLEENCWQKHGYPEGKERKGPSGRGKGGSGSSNTAPPPKANAVFGEASTSTNHVCLNGP*

Click here to download the sequence:
Link to NCBI Protein BLAST