Transcript Information: R_Transcript_47518.p1


Annotated TAIR IDAT5G42140.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16837547-16841640 | Reverse length=1073
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 17.3854039000459
Replicate 23.5956397341132
Replicate 36.9919412006002
Condition 2: 8 Hour
Replicate 14.0845985892477
Replicate 26.2300948519364
Replicate 39.599254596052
Condition 3: 24 Hour
Replicate 18.9427483344828
Replicate 26.0666639361836
Replicate 36.9916359248297


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47518.p1 GENE.R_Transcript_47518~~R_Transcript_47518.p1 ORF type:complete len:1127 (+),score=247.04,RCC1|PF00415.14|0.03,RCC1|PF00415.14|1.1e-10,RCC1|PF00415.14|1.3e-09,RCC1|PF00415.14|9.5e-14,RCC1|PF00415.14|5.1e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.1e-13,BRX|PF08381.7|2.4e-29,RCC1_2|PF13540.2|7e+03,RCC1_2|PF13540.2|1.4e+03,RCC1_2|PF13540.2|0.0064,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0087,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.7e-06,BRX_N|PF13713.2|3.3e-19,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|6.5e+02 R_Transcript_47518:192-3572(+)
ATGGCAGATCTTGTTAGCTATGGTAATTCCCATCGTGACATTGAGCAGGCATTAATTGCTTTGAAGAAGGGTGCTCAGTTACTTAAATACGGTCGCAAGGGAAAGCCCAAATTTTGTCCATTTAGACTTTCTAGTGATGAAACAACTCTGATTTGGTTATCTAGTGGCAGGGAGAAAAGTATTAAGTTATCTTGTGTGTCAAGAGTAATTCCTGGGCAGAGAACTGCTGTTTTTAGAAGGTATTTGCGCCCAGACAAGGATTATTTATCATTTTCCCTTATTTACAACAACGGAAAACGATCTCTTGATCTGATTTGCAAGGATAAAGTCGAGGCTGAGGTGTGGATTGCAGGTCTCACAGCACTTATTGCTGCTGCGAAGGGTGGCCGGTCGAAAATTGATGGATGGAATGATGAAGGCCTTTCCTTCCAGGACAACAGAGACTTGATATCAAGCAGTCCAAGTGACAGTTCGGCTACTCTTACACGATATCTTAGCTCTCCTGAGGGTTCTCTCAGTTTTCATGGTGGTTTATCTCCGAAGCGGAATCAGTTTGAGAATTTTATGCCTTCTGAGAAATCACATGTAGCTTTAGATAATAAAAATATGCAAGCAAAAGGACCGGGTTCAGATGCTTTCCGAGTTAGTGTTTCTAGTGCACCTAGCACTTCTAGTCATGGTTCTGCAGGTGATGATTGTGATGCTCTTGGTGATGTGTACATTTGGGGTGAGGTTATATGTGATAATTCTTCCAGACTTGGGGCTGAGAAAAATGTAAATTTTGTTGGCACAAGAGCAGATCTCCTTCTTCCTAAGCCATTGGAGTCTAATGTGGTTTTGGATGTTCACAACATAGCTTGTGGTGTCAGGCATGCTTCCCTTGTCACTCGGCAAGGTGAAGTTTTCACTTGGGGTGAGGAATCTGGAGGTAGGCTGGGACATGGTGTAGAAAAGGATGTTCTTCATCCTCGTCTTGTTGAATCATTAGCTGCTTATAACGTTGATTTTGTCGCATGTGGTGAGTTTCATACCTGTGCTGTAACATTTTCTGGTGAGTTGTACACATGGGGTGATGGCACTCATAATGCTGGTCTCCTCGGTCATGGCACTGAAGTCAGTCACTGGATACCAAAGAGAATTGCTGGACCTCTTGAAGGCCTTCAAGTGGCGTCAGTAACTTGTGGTCCTTGGCATACTGCAATAATAACATCGACTGGGCAGCTTTTTACGTTTGGAGATGGGACTTTTGGTGTCTTGGGCCATGGAGACCGTGAAAATGTTCCTTATCCAAGGGAGGTGGAGTCTCTATCTGGTTTGAGGACAATTTCTGTTGCATGTGGGGTTTGGCATACAGCAGCTGTTGTTGAAGTTATTGTAACTCAATCCAATTCGAGTGTTTCATCGGGGAAATTATTTACTTGGGGTGATGGTGATAAGAATCGTCTTGGTCAAGGTGACAAGGAACCCCGGCTGAAACCAACTTGTGTACCGTCACTTATTGAGTACAACTTTCAAAAAGTTGCTTGTGGGCATAGTTTAACTGTTGGATTGACCACATCAGGTCATGTTTTTACCATGGGGAGTACAGTTTACGGTCAGCTAGGGAATCCGTTTGCTGATGGAAAATTACCTTGTTTGGTCGAAGACAGGCTTGCTGCTGAGACTGTTGAAGAGATTGCTTGTGGTGCATATCACGTGGCAGTGTTAACTTCCAGGAATGAGGTTTATACATGGGGAAAGGGAGCTAATGGGAGGCTGGGTCATGGAGACATCGAAGACCGAAAAGCACCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAATATATTACTTGTGGTTCAACATACACGGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCCGAGCAATCCCAGTGTTCTTCTTGTAGACAGGCTTTTGGATTTACTCGAAAAAGGCATAATTGCTACAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCACTACGAGCTGCACTTGCTCCAAATCCTAGCAAACCATATCGTGTGTGTGATTCTTGTTATGCCAAACTGATTAAAGTTTCAGAAACTGGTAGCAGTAGAGGAAAAAGTTCTGGGCCTCGGCTCTCAGGTGAAAATAAAGATAGGTTAGATAAGGCTGAGCTACGGCTGTCGAAGTCTATGTTGCCTTCAAATCTTGATCTCATCAAGCAATTAGATACGAAAGCTGCCAAACAGGGAAAGAAATCTGAGACATTCTCGTTGGTTCAGAGTCAGACTTCCCAAACCCCTTCCTTGTTACAGCTGAAAGATGTTGTTTTATCTGGAAGTAATGATGTGAAGCAAACAATACCAAGGCCAATTGCGACGGCGAGTTCCATTTCAAGACCTGTGTCTCCTTTCTCAAGGAAGCCAAGTCCTCCACGTTCTGCTACTCCAGTTCCAACTACTTCTGGCTTGTCGTTCTCCAAAAGCATTGCTGACAGTTTGAAAAAAACTAACGAGCTCCTAAATCAGGAAGTAATTAAATTGCGTTCACAGGTTGATAGCTTGCGGCAGCGTTGTGAACTTCAAGAGTTAGAGCTTCAAAAGTCAACTAAGAAAACTCAAGAAGCTATAGCCCTCGCAGCAGAAGAATCTGCAAAGACTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGGTTACCTCCAGGAGCTTATGACCCAGAGACAATAAAACTTCCTCAACTACCAAATGGTTTTGAGTCAAATGGCATTCACATCTCTGATGCAATTGGCGAGCGCCTCTTGAAATCTGATGCCACGAATGGCTCATACCTGGCATCAGCAACTGGAGGCGACTCAATGACGAATGGAACTCAAGGGACTCTTCAGTCAGCCAGGGAATCATATATGCTCAATGAGAAAAGTTACCAGCCGAATTCTGGATTTGCATTGTCAAACACCAGAGATGATGAACCGAATGCTGCTGACGGGCTCCTGACATGTAGCAGTAATGTGTCTGATGCCTCTAATGCACGGGAATCTGCAGTTAGTCAAGACAGTCTGAATGGTTTCAGGTCGAAAAGCCCTGTCCCTGTAGGTTCTAACAATCAAGTTGAAGCCGAGTGGATTGAACAGTATGAACCTGGTGTGTACATAACTTTAGTTGCCCTTCGAGATGGAACTAGAGATCTGAAACGAGTGCGCTTCAGCCGAAGAAGATTTGGGGAGCACCAAGCGGAAACATGGTGGTCGGAGAATCGTGAAAAGGTATATGAAAGATACAACGTTCGTGGGTCAGACAAGACATCAGTATCCGGACAAACTGCAAGACGATCAGAAGGCGGATTGTCACCTACATCTTCTCACAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47518.p1 GENE.R_Transcript_47518~~R_Transcript_47518.p1 ORF type:complete len:1127 (+),score=247.04,RCC1|PF00415.14|0.03,RCC1|PF00415.14|1.1e-10,RCC1|PF00415.14|1.3e-09,RCC1|PF00415.14|9.5e-14,RCC1|PF00415.14|5.1e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.1e-13,BRX|PF08381.7|2.4e-29,RCC1_2|PF13540.2|7e+03,RCC1_2|PF13540.2|1.4e+03,RCC1_2|PF13540.2|0.0064,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0087,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.7e-06,BRX_N|PF13713.2|3.3e-19,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|6.5e+02 R_Transcript_47518:192-3572(+)
MADLVSYGNSHRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDETTLIWLSSGREKSIKLSCVSRVIPGQRTAVFRRYLRPDKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLTALIAAAKGGRSKIDGWNDEGLSFQDNRDLISSSPSDSSATLTRYLSSPEGSLSFHGGLSPKRNQFENFMPSEKSHVALDNKNMQAKGPGSDAFRVSVSSAPSTSSHGSAGDDCDALGDVYIWGEVICDNSSRLGAEKNVNFVGTRADLLLPKPLESNVVLDVHNIACGVRHASLVTRQGEVFTWGEESGGRLGHGVEKDVLHPRLVESLAAYNVDFVACGEFHTCAVTFSGELYTWGDGTHNAGLLGHGTEVSHWIPKRIAGPLEGLQVASVTCGPWHTAIITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSNSSVSSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPSLIEYNFQKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPFADGKLPCLVEDRLAAETVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYITCGSTYTAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPSKPYRVCDSCYAKLIKVSETGSSRGKSSGPRLSGENKDRLDKAELRLSKSMLPSNLDLIKQLDTKAAKQGKKSETFSLVQSQTSQTPSLLQLKDVVLSGSNDVKQTIPRPIATASSISRPVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVIKLRSQVDSLRQRCELQELELQKSTKKTQEAIALAAEESAKTKAAKEVIKSLTAQLKDMAERLPPGAYDPETIKLPQLPNGFESNGIHISDAIGERLLKSDATNGSYLASATGGDSMTNGTQGTLQSARESYMLNEKSYQPNSGFALSNTRDDEPNAADGLLTCSSNVSDASNARESAVSQDSLNGFRSKSPVPVGSNNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRGSDKTSVSGQTARRSEGGLSPTSSHN*

Click here to download the sequence:
Link to NCBI Protein BLAST