Transcript Information: R_Transcript_47523.p1


Annotated TAIR IDAT5G42140.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:16837547-16841640 | Reverse length=1073
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.6474205209256
Replicate 23.7213251823847
Replicate 32.189175617356
Condition 2: 8 Hour
Replicate 14.871644720173
Replicate 24.2157353254016
Replicate 33.8321819120365
Condition 3: 24 Hour
Replicate 13.5104900713084
Replicate 23.2191863541416
Replicate 34.0124289217509


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47523.p1 GENE.R_Transcript_47523~~R_Transcript_47523.p1 ORF type:complete len:1151 (+),score=248.09,RCC1|PF00415.14|0.031,RCC1|PF00415.14|1.1e-10,RCC1|PF00415.14|1.4e-09,RCC1|PF00415.14|9.7e-14,RCC1|PF00415.14|5.2e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.3e-13,BRX|PF08381.7|2.5e-29,RCC1_2|PF13540.2|7.2e+03,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0066,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0089,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.9e-06,BRX_N|PF13713.2|3.4e-19,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|1.1e+03 R_Transcript_47523:192-3644(+)
ATGGCAGATCTTGTTAGCTATGGTAATTCCCATCGTGACATTGAGCAGGCATTAATTGCTTTGAAGAAGGGTGCTCAGTTACTTAAATACGGTCGCAAGGGAAAGCCCAAATTTTGTCCATTTAGACTTTCTAGTGATGAAACAACTCTGATTTGGTTATCTAGTGGCAGGGAGAAAAGTATTAAGTTATCTTGTGTGTCAAGAGTAATTCCTGGGCAGAGAACTGCTGTTTTTAGAAGGTATTTGCGCCCAGACAAGGATTATTTATCATTTTCCCTTATTTACAACAACGGAAAACGATCTCTTGATCTGATTTGCAAGGATAAAGTCGAGGCTGAGGTGTGGATTGCAGGTCTCACAGCACTTATTGCTGCTGCGAAGGGTGGCCGGTCGAAAATTGATGGATGGAATGATGAAGGCCTTTCCTTCCAGGACAACAGAGACTTGATATCAAGCAGTCCAAGTGACAGTTCGGCTACTCTTACACGATATCTTAGCTCTCCTGAGGGTTCTCTCAGTTTTCATGGTGGTTTATCTCCGAAGCGGAATCAGTTTGAGAATTTTATGCCTTCTGAGAAATCACATGTAGCTTTAGATAATAAAAATATGCAAGCAAAAGGACCGGGTTCAGATGCTTTCCGAGTTAGTGTTTCTAGTGCACCTAGCACTTCTAGTCATGGTTCTGCAGGTGATGATTGTGATGCTCTTGGTGATGTGTACATTTGGGGTGAGGTTATATGTGATAATTCTTCCAGACTTGGGGCTGAGAAAAATGTAAATTTTGTTGGCACAAGAGCAGATCTCCTTCTTCCTAAGCCATTGGAGTCTAATGTGGTTTTGGATGTTCACAACATAGCTTGTGGTGTCAGGCATGCTTCCCTTGTCACTCGGCAAGGTGAAGTTTTCACTTGGGGTGAGGAATCTGGAGGTAGGCTGGGACATGGTGTAGAAAAGGATGTTCTTCATCCTCGTCTTGTTGAATCATTAGCTGCTTATAACGTTGATTTTGTCGCATGTGGTGAGTTTCATACCTGTGCTGTAACATTTTCTGGTGAGTTGTACACATGGGGTGATGGCACTCATAATGCTGGTCTCCTCGGTCATGGCACTGAAGTCAGTCACTGGATACCAAAGAGAATTGCTGGACCTCTTGAAGGCCTTCAAGTGGCGTCAGTAACTTGTGGTCCTTGGCATACTGCAATAATAACATCGACTGGGCAGCTTTTTACGTTTGGAGATGGGACTTTTGGTGTCTTGGGCCATGGAGACCGTGAAAATGTTCCTTATCCAAGGGAGGTGGAGTCTCTATCTGGTTTGAGGACAATTTCTGTTGCATGTGGGGTTTGGCATACAGCAGCTGTTGTTGAAGTTATTGTAACTCAATCCAATTCGAGTGTTTCATCGGGGAAATTATTTACTTGGGGTGATGGTGATAAGAATCGTCTTGGTCAAGGTGACAAGGAACCCCGGCTGAAACCAACTTGTGTACCGTCACTTATTGAGTACAACTTTCAAAAAGTTGCTTGTGGGCATAGTTTAACTGTTGGATTGACCACATCAGGTCATGTTTTTACCATGGGGAGTACAGTTTACGGTCAGCTAGGGAATCCGTTTGCTGATGGAAAATTACCTTGTTTGGTCGAAGACAGGCTTGCTGCTGAGACTGTTGAAGAGATTGCTTGTGGTGCATATCACGTGGCAGTGTTAACTTCCAGGAATGAGGTTTATACATGGGGAAAGGGAGCTAATGGGAGGCTGGGTCATGGAGACATCGAAGACCGAAAAGCACCAACTTTGGTTGAGGCTTTGAAAGATAGACATGTTAAATATATTACTTGTGGTTCAACATACACGGCAGCTATATGTCTTCACAAATGGGTATCTGGTGCCGAGCAATCCCAGTGTTCTTCTTGTAGACAGGCTTTTGGATTTACTCGAAAAAGGCATAATTGCTACAATTGTGGACTTGTGCACTGCCATTCATGTAGTTCAAAGAAAGCACTACGAGCTGCACTTGCTCCAAATCCTAGCAAACCATATCGTGTGTGTGATTCTTGTTATGCCAAACTGATTAAAGTTTCAGAAACTGGTAGCAGTAGAGGAAAAAGTTCTGGGCCTCGGCTCTCAGGTGAAAATAAAGATAGGTTAGATAAGGCTGAGCTACGGCTGTCGAAGTCTATGTTGCCTTCAAATCTTGATCTCATCAAGCAATTAGATACGAAAGCTGCCAAACAGGGAAAGAAATCTGAGACATTCTCGTTGGTTCAGAGTCAGACTTCCCAAACCCCTTCCTTGTTACAGCTGAAAGATGTTGTTTTATCTGGAAGTAATGATGTGAAGCAAACAATACCAAGGCCAATTGCGACGGCGAGTTCCATTTCAAGACCTGTGTCTCCTTTCTCAAGGAAGCCAAGTCCTCCACGTTCTGCTACTCCAGTTCCAACTACTTCTGGCTTGTCGTTCTCCAAAAGCATTGCTGACAGTTTGAAAAAAACTAACGAGCTCCTAAATCAGGAAGTAATTAAATTGCGTTCGCAGGTATTTCTTATAGTTCCCATCATGTGTCTCAGTCATTTGAATCCTGTGCTGATGGTCTTGTATGTGGAAAAGGTTGATAGCTTGCGGCAGCGTTGTGAACTTCAAGAGTTAGAGCTTCAAAAGTCAACTAAGAAAACTCAAGAAGCTATAGCCCTCGCAGCAGAAGAATCTGCAAAGACTAAAGCTGCAAAAGAAGTGATAAAGTCGCTTACTGCACAGCTCAAAGATATGGCTGAGAGGTTACCTCCAGGAGCTTATGACCCAGAGACAATAAAACTTCCTCAACTACCAAATGGTTTTGAGTCAAATGGCATTCACATCTCTGATGCAATTGGCGAGCGCCTCTTGAAATCTGATGCCACGAATGGCTCATACCTGGCATCAGCAACTGGAGGCGACTCAATGACGAATGGAACTCAAGGGACTCTTCAGTCAGCCAGGGAATCATATATGCTCAATGAGAAAAGTTACCAGCCGAATTCTGGATTTGCATTGTCAAACACCAGAGATGATGAACCGAATGCTGCTGACGGGCTCCTGACATGTAGCAGTAATGTGTCTGATGCCTCTAATGCACGGGAATCTGCAGTTAGTCAAGACAGTCTGAATGGTTTCAGGTCGAAAAGCCCTGTCCCTGTAGGTTCTAACAATCAAGTTGAAGCCGAGTGGATTGAACAGTATGAACCTGGTGTGTACATAACTTTAGTTGCCCTTCGAGATGGAACTAGAGATCTGAAACGAGTGCGCTTCAGCCGAAGAAGATTTGGGGAGCACCAAGCGGAAACATGGTGGTCGGAGAATCGTGAAAAGGTATATGAAAGATACAACGTTCGTGGGTCAGACAAGACATCAGTATCCGGACAAACTGCAAGACGATCAGAAGGCGGATTGTCACCTACATCTTCTCACAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47523.p1 GENE.R_Transcript_47523~~R_Transcript_47523.p1 ORF type:complete len:1151 (+),score=248.09,RCC1|PF00415.14|0.031,RCC1|PF00415.14|1.1e-10,RCC1|PF00415.14|1.4e-09,RCC1|PF00415.14|9.7e-14,RCC1|PF00415.14|5.2e-12,RCC1|PF00415.14|0.00017,RCC1|PF00415.14|8.3e-13,BRX|PF08381.7|2.5e-29,RCC1_2|PF13540.2|7.2e+03,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|0.0066,RCC1_2|PF13540.2|3.2e-07,RCC1_2|PF13540.2|0.0019,RCC1_2|PF13540.2|0.0089,RCC1_2|PF13540.2|0.23,RCC1_2|PF13540.2|7.9e-06,BRX_N|PF13713.2|3.4e-19,FYVE|PF01363.17|1.2e-14,PH_12|PF16457.1|1.3e-06,PH_12|PF16457.1|1.1e+03 R_Transcript_47523:192-3644(+)
MADLVSYGNSHRDIEQALIALKKGAQLLKYGRKGKPKFCPFRLSSDETTLIWLSSGREKSIKLSCVSRVIPGQRTAVFRRYLRPDKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLTALIAAAKGGRSKIDGWNDEGLSFQDNRDLISSSPSDSSATLTRYLSSPEGSLSFHGGLSPKRNQFENFMPSEKSHVALDNKNMQAKGPGSDAFRVSVSSAPSTSSHGSAGDDCDALGDVYIWGEVICDNSSRLGAEKNVNFVGTRADLLLPKPLESNVVLDVHNIACGVRHASLVTRQGEVFTWGEESGGRLGHGVEKDVLHPRLVESLAAYNVDFVACGEFHTCAVTFSGELYTWGDGTHNAGLLGHGTEVSHWIPKRIAGPLEGLQVASVTCGPWHTAIITSTGQLFTFGDGTFGVLGHGDRENVPYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSNSSVSSGKLFTWGDGDKNRLGQGDKEPRLKPTCVPSLIEYNFQKVACGHSLTVGLTTSGHVFTMGSTVYGQLGNPFADGKLPCLVEDRLAAETVEEIACGAYHVAVLTSRNEVYTWGKGANGRLGHGDIEDRKAPTLVEALKDRHVKYITCGSTYTAAICLHKWVSGAEQSQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALRAALAPNPSKPYRVCDSCYAKLIKVSETGSSRGKSSGPRLSGENKDRLDKAELRLSKSMLPSNLDLIKQLDTKAAKQGKKSETFSLVQSQTSQTPSLLQLKDVVLSGSNDVKQTIPRPIATASSISRPVSPFSRKPSPPRSATPVPTTSGLSFSKSIADSLKKTNELLNQEVIKLRSQVFLIVPIMCLSHLNPVLMVLYVEKVDSLRQRCELQELELQKSTKKTQEAIALAAEESAKTKAAKEVIKSLTAQLKDMAERLPPGAYDPETIKLPQLPNGFESNGIHISDAIGERLLKSDATNGSYLASATGGDSMTNGTQGTLQSARESYMLNEKSYQPNSGFALSNTRDDEPNAADGLLTCSSNVSDASNARESAVSQDSLNGFRSKSPVPVGSNNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRGSDKTSVSGQTARRSEGGLSPTSSHN*

Click here to download the sequence:
Link to NCBI Protein BLAST