Transcript Information: R_Transcript_47560.p1


Annotated TAIR IDAT1G17370.1
Annotated Gene Nameoligouridylate binding protein 1B
Annotated Gene Symbol(s)UBP1B
Annotation TypeOrtholog
Chromosome Positionchr1:5951842-5954825 | Reverse length=419
E-Value8.5E-230
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 131.812303378224
Replicate 225.495507648362
Replicate 328.197103183835
Condition 2: 8 Hour
Replicate 126.584653371295
Replicate 235.883891335617
Replicate 335.957476276576
Condition 3: 24 Hour
Replicate 134.382049395776
Replicate 233.818063632218
Replicate 334.18651017763


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47560.p1 GENE.R_Transcript_47560~~R_Transcript_47560.p1 ORF type:complete len:420 (+),score=100.05,RRM_1|PF00076.18|4.7e-14,RRM_1|PF00076.18|1.4e-19,RRM_1|PF00076.18|2.5e-12,RRM_6|PF14259.2|3.4e-06,RRM_6|PF14259.2|1.4e-11,RRM_6|PF14259.2|1.8e-08,RRM_5|PF13893.2|6.4e-11,RRM_5|PF13893.2|8.5e-05,RRM_5|PF13893.2|1.7e-09 R_Transcript_47560:279-1538(+)
ATGCAACAACAGAGATTGAAGCAACATCAACATCATCAGCAACAACAACAAGCCCTGATGCAGCAATCTGTTTACCATCCTGGTTTACTGGCCGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGGTTTGATTCAAGTACATGCCGCAGTGTGTATGTTGGAAACATTCATTCTCAGGTCACTGAACCCCTTCTTCAGGAAGTTTTTTCAAACACTGGCCCAATAGAGGGATGCAAGCTGATCCGCAAGGAGAAGTCCTCCTATGGTTTTGTGGACTATTTTGACCGCAGATCGGCATCCCTTGCTATTGTGACCCTGAATGGGCGGCATCTGTTTGGACAACCCATCAAAGTTAATTGGGCATATGCCAGCAGTCAGAGGGAGGATACAACAAATCATTTTAACATATTTGTTGGAGATCTAAGCCCAGAGGTTACTGATGCTACACTATTTGCATGCTTCTCTGGTTATCAGACCTGCTCAGATGCTAGAGTCATGTCGAATCAGAAGACTGGGCGTTCCAGGGGCTTTGGATTTGTTTCATTTAGGAACCAGCAGGATGCACAGAGTGCAATAAATGACCTAAATGGGAAGTGGCTAGGGAGCAGACAGATACGCTGCAACTGGGCTACCAAGGGTGCTGCAGGAAATGATGACAAGCCAGGCTCAGATTCTAAGAGTGTTGTGGAACTCACAAATGGAGGATCTGAAGAAGGTCAAGAAAATACAAATGATGATGCTCCGGGGAATAACCCGCAATACACAACTGTTTATGTTGGCAATCTTGCCCCAGAGGTTACATCTGTAGAACTTCATCGTCATTTCCATTCCCTTGGTGCTGGTATTATTGAAGATGTTCGGATACAAAGGGATAAGGGCTTTGGTTTTGTAAGATACAGCACTCATGCTGAAGCTGCCAGGGCTATCCAACTAGGGAATGCAAGAAACCTTTATGGAAAACCTATAAAGTGTTCTTGGGGCAGTAAGCCCACCCCGCCTGGAACAAGCTCTGCACCACTTCCTCCACCAATGCAGGTGCCTACCTTCACTGCAGCTGATCTCGCTGCATATGAGAGACAACTGGCACTAAGCAAAATGGGTGGGGCCCAGGCTCTTATGCATCCACCAGGTCAGCTTCCGCTTAAACCAGCTGCCATGGCAATGGGTGCACCTGGAGCTGGTCAAGCAGTGTACGATGGCATGTTCCAGAATGTCCCCTCATCCCAACAGCTCATGTATTATCATTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47560.p1 GENE.R_Transcript_47560~~R_Transcript_47560.p1 ORF type:complete len:420 (+),score=100.05,RRM_1|PF00076.18|4.7e-14,RRM_1|PF00076.18|1.4e-19,RRM_1|PF00076.18|2.5e-12,RRM_6|PF14259.2|3.4e-06,RRM_6|PF14259.2|1.4e-11,RRM_6|PF14259.2|1.8e-08,RRM_5|PF13893.2|6.4e-11,RRM_5|PF13893.2|8.5e-05,RRM_5|PF13893.2|1.7e-09 R_Transcript_47560:279-1538(+)
MQQQRLKQHQHHQQQQQALMQQSVYHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHSQVTEPLLQEVFSNTGPIEGCKLIRKEKSSYGFVDYFDRRSASLAIVTLNGRHLFGQPIKVNWAYASSQREDTTNHFNIFVGDLSPEVTDATLFACFSGYQTCSDARVMSNQKTGRSRGFGFVSFRNQQDAQSAINDLNGKWLGSRQIRCNWATKGAAGNDDKPGSDSKSVVELTNGGSEEGQENTNDDAPGNNPQYTTVYVGNLAPEVTSVELHRHFHSLGAGIIEDVRIQRDKGFGFVRYSTHAEAARAIQLGNARNLYGKPIKCSWGSKPTPPGTSSAPLPPPMQVPTFTAADLAAYERQLALSKMGGAQALMHPPGQLPLKPAAMAMGAPGAGQAVYDGMFQNVPSSQQLMYYH*

Click here to download the sequence:
Link to NCBI Protein BLAST