Transcript Information: R_Transcript_47580.p1


Annotated TAIR IDAT1G14000.1
Annotated Gene NameVH1-interacting kinase
Annotated Gene Symbol(s)VIK
Annotation TypeOrtholog
Chromosome Positionchr1:4797606-4800043 | Forward length=438
E-Value9.2E-281
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 168.365635575856
Replicate 251.154622832435
Replicate 358.151877033869
Condition 2: 8 Hour
Replicate 148.192634191623
Replicate 260.882582831228
Replicate 372.482681500045
Condition 3: 24 Hour
Replicate 156.037920369441
Replicate 248.872448677984
Replicate 353.276662999243


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47580.p1 GENE.R_Transcript_47580~~R_Transcript_47580.p1 ORF type:complete len:440 (+),score=85.04,Pkinase_Tyr|PF07714.13|2.5e-65,Pkinase|PF00069.21|1.5e-57,Ank_4|PF13637.2|0.00012,Ank_4|PF13637.2|1.6e-06,Ank_2|PF12796.3|2.1e-06,Ank_2|PF12796.3|6.8e+02,Ank_5|PF13857.2|0.0032,Ank_5|PF13857.2|2.5,Ank_5|PF13857.2|9.1e+03,Ank|PF00023.26|1e-05,Ank|PF00023.26|1e+04,Ank|PF00023.26|1.6e+04,Ank|PF00023.26|1.6e+04,Ank_3|PF13606.2|8.6e-05,Ank_3|PF13606.2|7.9e+03 R_Transcript_47580:234-1553(+)
ATGAGCGACGGAGATAGTTCGTCGGAGAACAGCACGGCGGTGGCGGTGGAAGGAGGTGGATGTCCACCGGCGGCTCCAAAAGAGAAGCAGAAGGAGAAAGCGAGAGTGAGTAAAACGTCGGCGATATTATGGCATGCACATCAAAACGACGCCGGAGCAGTTAGGAAGCTTCTAGAAGAAGATCCGACGCTTGTGAATGCTAGAGATTATGATAATCGAACTCCTTTGCATGTTGCTTCTTTACATGGCTGGGTTGATGTTGCCAAATGCTTGATTGAGTTTGGTGCTGACGTCAACGCGCAAGATCGTTGGAAGAACACTCCTCTAGCTGATGCCGAAGGAGCAAAGAAACATGGAATGATCGAGCTGTTAAAGTCATATGGTGGCTTATCTTATGGACAAAATGGAAGCCATTTTGAGCCAAAGCCTGTTCCCCCTCCCCTGCCTAACAAATGTGACTGGGAAATTGACCCTGCTGAGCTGGACTTCTCACATTCTGCAATAATTGGGAAGGGCTCATTTGGTGAAATTTTGAAAGCCTACTGGCGAGGAACTCCTGTTGCAGTCAAACGAATACTTCCATCTCTTTCAGACGATAGACTGGTTATTCAGGATTTCAGGCATGAGGTCATCTTACTGGTGAAGCTTCGTCATCCAAATATCGTTCAGTTCCTCGGAGCCTGTACTGAAAAGAAGCCCTTGATGTTAATTACTGAATATCTGCGAGGGGGTGATCTACATCAGTACCTTAAAGAAAAGGGAGCCCTTAGTCCATCAACAGCTGTAAATTTTGCATTGGACATTGCAAGAGGAATGGCTTATCTTCACAATGAGCCTAATGTCATAATCCACCGAGATTTGAAACCAAGGAATGTTCTTTTAGTCAACTCCAATGCCGACCATTTAAAAGTTGGAGATTTTGGACTAAGCAAACTCATTAGGGTCCAACATGCACATGATGTGTACAAAATGACTGGCGAGACAGGAAGTTACCGATATATGGCTCCAGAGGTATTCAAGCATCGAAAGTATGACAAGAAGGTGGATGTTTTCTCGTTTGCCATGATATTGTATGAGATGCTTGAGGGAGATCCTCCCATGTCACATTATGAACCATATGAGGCAGCAAAATATGTTGCGGAAGGACACAGACCTCAATTTAGATCCAAAGGATTTACTCCTGAATTGAGAGAGTTGACTGAGCAGTGCTGGGCTGCTGACATAAACCAGAGGCCTTCATTCTTGGAGATACTTAAGAAACTCGAGAAAATAAAGGAAAATCTGCCAGCAGATCATCACTGGCACTTCTTTTCTGGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47580.p1 GENE.R_Transcript_47580~~R_Transcript_47580.p1 ORF type:complete len:440 (+),score=85.04,Pkinase_Tyr|PF07714.13|2.5e-65,Pkinase|PF00069.21|1.5e-57,Ank_4|PF13637.2|0.00012,Ank_4|PF13637.2|1.6e-06,Ank_2|PF12796.3|2.1e-06,Ank_2|PF12796.3|6.8e+02,Ank_5|PF13857.2|0.0032,Ank_5|PF13857.2|2.5,Ank_5|PF13857.2|9.1e+03,Ank|PF00023.26|1e-05,Ank|PF00023.26|1e+04,Ank|PF00023.26|1.6e+04,Ank|PF00023.26|1.6e+04,Ank_3|PF13606.2|8.6e-05,Ank_3|PF13606.2|7.9e+03 R_Transcript_47580:234-1553(+)
MSDGDSSSENSTAVAVEGGGCPPAAPKEKQKEKARVSKTSAILWHAHQNDAGAVRKLLEEDPTLVNARDYDNRTPLHVASLHGWVDVAKCLIEFGADVNAQDRWKNTPLADAEGAKKHGMIELLKSYGGLSYGQNGSHFEPKPVPPPLPNKCDWEIDPAELDFSHSAIIGKGSFGEILKAYWRGTPVAVKRILPSLSDDRLVIQDFRHEVILLVKLRHPNIVQFLGACTEKKPLMLITEYLRGGDLHQYLKEKGALSPSTAVNFALDIARGMAYLHNEPNVIIHRDLKPRNVLLVNSNADHLKVGDFGLSKLIRVQHAHDVYKMTGETGSYRYMAPEVFKHRKYDKKVDVFSFAMILYEMLEGDPPMSHYEPYEAAKYVAEGHRPQFRSKGFTPELRELTEQCWAADINQRPSFLEILKKLEKIKENLPADHHWHFFSG*

Click here to download the sequence:
Link to NCBI Protein BLAST