Transcript Information: R_Transcript_475809.p1


Annotated TAIR IDAT5G23250.1
Annotated Gene NameSuccinyl-CoA ligase, alpha subunit
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:7830460-7832491 | Forward length=341
E-Value1.1E-159
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.92904292284497
Replicate 20.44004222429367
Replicate 30.13716609339013
Condition 2: 8 Hour
Replicate 10.14662194579189
Replicate 20.133897496055
Replicate 30.10869227916399
Condition 3: 24 Hour
Replicate 10
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_475809.p1 GENE.R_Transcript_475809~~R_Transcript_475809.p1 ORF type:5prime_partial len:334 (+),score=82.54,CoA_binding|PF02629.15|4.8e-27,Ligase_CoA|PF00549.15|8.1e-25,Succ_CoA_lig|PF13607.2|5.2e-09 R_Transcript_475809:1-1002(+)
AAGATGAATAAGCTCTCCCAAATCAAATCTAAATTCAACACCTTGAAGAAATCCAACTTCTTTGCTGTTTATAACAAAAGATTTTACACTCCAAACAATCCATTGGTCTTCGTCAATGAATCAACCAGAGTCATTTGCCAAGGACTTACTGGAAAGCAAGGAACTTTTCATACACAACAAGCTATTGAATATGGAACCAGAATGGTTGGGGGAGTTTCTCCAGGAAAGCCAAAGGGATTCAAGCATTTGGGACTTCCAGTCTACTCTACTTGCAAAGAGGCAAGAGAAGCAACTGGAGCAGATGCAACCGTTATTTATGTTCCTCCTCCTTTCGCAGCAGCAGCTATCGAAGAGGCTTTGGAAGCAGAAATCCCATTGATCGTGTGCATCACTGAGGGTATCCCACAACAAGATATGGTCAGAGTCAAGTATAGACTCAACAGACAAAGCAAATCCAGATTGATTGGACCTAACTGCCCAGGAATCATCAAGCCAGGAGAATGTAAAATAGGAATCATGCCTGGACACATCCATCTTCCTGGAAGAATTGGAGTCGTCTCTAGAAGTGGTACCTTGACTTATGAAGCTGTTGCACAAACCACTGCTGTTGGATTGGGACAATCTACCTGCGTCGGTATTGGTGGTGATCCATTCAACGGAACCAACTTTGTTGACTGCTTGAAGTTGTTCCTCCAAGATCCTCAAACCGAGGGTATCATCATGATCGGAGAGATCGGAGGAGAGGCTGAGGAAGAGGCAGCAGAATTTTTGAAGAAAAATAACACTGGATCCCAAAGAAAGCCAGTTGTCGGATTCATTGCTGGAGTTACTGCACCACCAGGAAGACGTATGGGTCATGCTGGTGCTATCATCAGTGGAGGAAAGGGTGATGCTCCATCCAAGATTAATGCTTTGAAGGATGCTGGAGTCACCATCTCCCCATCCCCTGCAAGACTTGGTGCTACCATGTTCCAAGTGTTTAAGGAGAGACAATTGCTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_475809.p1 GENE.R_Transcript_475809~~R_Transcript_475809.p1 ORF type:5prime_partial len:334 (+),score=82.54,CoA_binding|PF02629.15|4.8e-27,Ligase_CoA|PF00549.15|8.1e-25,Succ_CoA_lig|PF13607.2|5.2e-09 R_Transcript_475809:1-1002(+)
KMNKLSQIKSKFNTLKKSNFFAVYNKRFYTPNNPLVFVNESTRVICQGLTGKQGTFHTQQAIEYGTRMVGGVSPGKPKGFKHLGLPVYSTCKEAREATGADATVIYVPPPFAAAAIEEALEAEIPLIVCITEGIPQQDMVRVKYRLNRQSKSRLIGPNCPGIIKPGECKIGIMPGHIHLPGRIGVVSRSGTLTYEAVAQTTAVGLGQSTCVGIGGDPFNGTNFVDCLKLFLQDPQTEGIIMIGEIGGEAEEEAAEFLKKNNTGSQRKPVVGFIAGVTAPPGRRMGHAGAIISGGKGDAPSKINALKDAGVTISPSPARLGATMFQVFKERQLL*

Click here to download the sequence:
Link to NCBI Protein BLAST