Transcript Information: R_Transcript_477545.p1


Annotated TAIR IDAT3G19920.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64230.1); Has 217 Blast hits to 217 proteins in 16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 215; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:6929840-6931771 | Reverse length=416
E-Value1E-61
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20.13633961309285
Replicate 30
Condition 2: 8 Hour
Replicate 10
Replicate 20.29040106287254
Replicate 30.82507321001759
Condition 3: 24 Hour
Replicate 10.14907667030977
Replicate 20.42964790046579
Replicate 30.14212795251232


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_477545.p1 GENE.R_Transcript_477545~~R_Transcript_477545.p1 ORF type:5prime_partial len:154 (+),score=27.24 R_Transcript_477545:2-463(+)
CTAGCTCAAGAATTGTTGTGGATTACAAACAAATTGAGGGCTAGTCATGCAGTGGATGAGGCCTTGGTACAATGGAGCCTTGCTTCTGGCTTGGCTTCCCTTTCCCTTAATGCCAATCCAAGGGTCCAAGCTTTGTTCATTAAGCTATCCGCTTCATTAATCGGAGACATCGCTCAAGCAGATTATCAAGTACCAACACAAGTTCAATACAGATTGCTGGTGCTTTGGCTTCCATTATTTTGTTATGCAAGCAATGGACTTAGGTACCCTGCATTGTCAAGCTATGAGAAGATAGAGGTTGAGAGAACAATGGAGCATATGATTGCAGGGCTTTTGCCCACTGAACAAGAGATTGTGCTAAGAAATTGGCTCCAAGATTTTGCAATTTGCTCCTCAGATTGGCCTAATCTTCGACCATCATATGATCGTTGGTGCCAATCTTCTCGTCGACGTGTTGCCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_477545.p1 GENE.R_Transcript_477545~~R_Transcript_477545.p1 ORF type:5prime_partial len:154 (+),score=27.24 R_Transcript_477545:2-463(+)
LAQELLWITNKLRASHAVDEALVQWSLASGLASLSLNANPRVQALFIKLSASLIGDIAQADYQVPTQVQYRLLVLWLPLFCYASNGLRYPALSSYEKIEVERTMEHMIAGLLPTEQEIVLRNWLQDFAICSSDWPNLRPSYDRWCQSSRRRVA*

Click here to download the sequence:
Link to NCBI Protein BLAST