Transcript Information: R_Transcript_47820.p1


Annotated TAIR IDAT5G51960.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:21110716-21111116 | Forward length=103
E-Value3E-42
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 145.306456655463
Replicate 250.053680456711
Replicate 343.563706321254
Condition 2: 8 Hour
Replicate 142.194392275164
Replicate 252.308491449916
Replicate 361.909957651677
Condition 3: 24 Hour
Replicate 155.344713852501
Replicate 260.061196085947
Replicate 359.800336019559


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47820.p1 GENE.R_Transcript_47820~~R_Transcript_47820.p1 ORF type:complete len:112 (+),score=21.89,Complex1_LYR|PF05347.11|2.6e-07,Complex1_LYR_1|PF13232.2|2.1e-06,Complex1_LYR_2|PF13233.2|4.7e-06 R_Transcript_47820:196-531(+)
ATGGGTTCAGAAGCTTTGCATGCTGCAAAGGTTTATAGGCAACTCCTGAAATCTGTGAAGAAGCACATTGGACAGGAAGACTACAAACGGCACTTTAGGGATTTTATAACTGAAGAATTTCAAAAGAATCGAGGATTCTCAGATCCATCTTCTTCCATCCAGAATAAACTGAAGCTTGCTCGTGACTATACATTCTTGCTTAACAGCGTGCACCATCAAAAGGAACTACTATTCTCCTATAACATTGCTGTCGATAGATCAGATGAGATGAAAAAGGTACTTGGAAAATCTGCCGCAAGCGTGGGACTTCAACTTCCTGAGGCTTATCAGCCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47820.p1 GENE.R_Transcript_47820~~R_Transcript_47820.p1 ORF type:complete len:112 (+),score=21.89,Complex1_LYR|PF05347.11|2.6e-07,Complex1_LYR_1|PF13232.2|2.1e-06,Complex1_LYR_2|PF13233.2|4.7e-06 R_Transcript_47820:196-531(+)
MGSEALHAAKVYRQLLKSVKKHIGQEDYKRHFRDFITEEFQKNRGFSDPSSSIQNKLKLARDYTFLLNSVHHQKELLFSYNIAVDRSDEMKKVLGKSAASVGLQLPEAYQP*

Click here to download the sequence:
Link to NCBI Protein BLAST