Transcript Information: R_Transcript_47997.p1


Annotated TAIR IDAT1G61870.1
Annotated Gene Namepentatricopeptide repeat 336
Annotated Gene Symbol(s)PPR336
Annotation TypeOrtholog
Chromosome Positionchr1:22865326-22866552 | Reverse length=408
E-Value1.6E-174
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 135.05655528276
Replicate 232.823000650789
Replicate 335.013772603548
Condition 2: 8 Hour
Replicate 131.594664448058
Replicate 232.514830667332
Replicate 338.735446981471
Condition 3: 24 Hour
Replicate 145.118072765116
Replicate 241.374133303415
Replicate 345.133207431295


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_47997.p1 GENE.R_Transcript_47997~~R_Transcript_47997.p1 ORF type:complete len:403 (+),score=77.31,PPR_2|PF13041.2|6.9e+03,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|7.5e-08,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|0.27,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.78,PPR|PF01535.16|90,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.017,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|13,PPR|PF01535.16|26,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|1.4e+02,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|64,PPR_3|PF13812.2|0.00098,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|51,PPR_3|PF13812.2|1.3e+03 R_Transcript_47997:175-1383(+)
ATGGCCTTGTTAAACAGACTTCGATCTCGACACCTTCTCAATCTTCAACAACAGCTTCGAACCTTCTCATCGACATCAATACTAAACCCAGATGGGAAAGGAGTATTATCAAGCAAAGAGAAAACAAGGACAGCACTATCTCTACTCAAAACTGAGAAAAACCCAGAACGCATTCTCGAGATTTGTAGGACAGCTTCACTTACCCCTGAAACCCATCTCGATAGAATCGCCTTTTCTGTTGCCATTTCTAAGCTTGCTGAGTCCAATTACTTTGAGGGTATTCGTGGGTTTCTTGAGGAGCTCAAGACCCGACCCGATTTGAGAAATGAGCGCTTTGTTTCTCATTCAATCATCCTTTATGGTCAAGCTGGGATGATAAACAATGCTATCACTACTTTTGAGCACATGGAGCAACTGGGCATTCATAGGACTGTAAAATCTCTGAATGCTTTGTTGTTTGCTTGTATCTTAGCTGAAAAGTACGATGAAGTTAAGAGGATTTTTACAGATTTTCCCAAAACGTATAACATTGAGCCTGATATTGATACTTACAATACTGTGATTAAGGCTTTTAGTGAGGCCGGTGAGTCAAGTTCAGGATATTCAATTGTAGCTGAGATGGATAGGAAGAGGTGCAAGCCAAATGCAACAACGTTTGGGAATTTGATTGCTGGGTTTTATAAGGAGGAGAAGTTTGAGGATGTGGGGAAGGTTTTGAAGTTGATGGAAGAGCATGGGCTGAAGCCAGGGCTTGGCACATATAATGTCAGGATCAAGAGCTTGTGTAAGTTGGGAAGGTCATTTGAGGCCAAGGCTTTGTTGGATGGGATGCTTGAGAGAGGGATGAAGCCAAATTCGAATACATATTGTGATTTGATCCATGGATTCTGTAGGGAAGGAAAGTTTGAGGATTCAAAGAAATTGTTTAAGAGTATGGTCAACCATGGGTGTAAACCAGACTCCGATTGCTACTTCACTCTAGTCCACTTCTTAAGTAAAGGTGGTGATTACGAGAGTGCGCTGCAAATCTGTAAGGAGAGTATGGAGAAAAATTGGGTTCCAAATTTTACTACCATGAAGTCTCTCGTGGAAGGTTTGGCGAGCATTTCAAAGGTTGAAGAGGCTAAGGGCCTAGTTGCGCAAATCAAGGAGCAGTTTCCCAAAAATGCTGATCTTTGGAAAGAAACGGAAGAGAGCTTGTCAAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_47997.p1 GENE.R_Transcript_47997~~R_Transcript_47997.p1 ORF type:complete len:403 (+),score=77.31,PPR_2|PF13041.2|6.9e+03,PPR_2|PF13041.2|1.1,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|1.3e-10,PPR_2|PF13041.2|7.5e-08,PPR_2|PF13041.2|1.3e-12,PPR_2|PF13041.2|1.2e-08,PPR_2|PF13041.2|0.27,PPR|PF01535.16|1.6e+03,PPR|PF01535.16|0.78,PPR|PF01535.16|90,PPR|PF01535.16|0.0043,PPR|PF01535.16|0.017,PPR|PF01535.16|3.8e-05,PPR|PF01535.16|8.7e-07,PPR|PF01535.16|13,PPR|PF01535.16|26,PPR_1|PF12854.3|56,PPR_1|PF12854.3|0.023,PPR_1|PF12854.3|0.41,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|4.6e-09,PPR_1|PF12854.3|0.21,PPR_1|PF12854.3|1.4e+02,PPR_3|PF13812.2|5.4e+03,PPR_3|PF13812.2|0.51,PPR_3|PF13812.2|64,PPR_3|PF13812.2|0.00098,PPR_3|PF13812.2|1.3,PPR_3|PF13812.2|0.13,PPR_3|PF13812.2|0.28,PPR_3|PF13812.2|51,PPR_3|PF13812.2|1.3e+03 R_Transcript_47997:175-1383(+)
MALLNRLRSRHLLNLQQQLRTFSSTSILNPDGKGVLSSKEKTRTALSLLKTEKNPERILEICRTASLTPETHLDRIAFSVAISKLAESNYFEGIRGFLEELKTRPDLRNERFVSHSIILYGQAGMINNAITTFEHMEQLGIHRTVKSLNALLFACILAEKYDEVKRIFTDFPKTYNIEPDIDTYNTVIKAFSEAGESSSGYSIVAEMDRKRCKPNATTFGNLIAGFYKEEKFEDVGKVLKLMEEHGLKPGLGTYNVRIKSLCKLGRSFEAKALLDGMLERGMKPNSNTYCDLIHGFCREGKFEDSKKLFKSMVNHGCKPDSDCYFTLVHFLSKGGDYESALQICKESMEKNWVPNFTTMKSLVEGLASISKVEEAKGLVAQIKEQFPKNADLWKETEESLSK*

Click here to download the sequence:
Link to NCBI Protein BLAST