Transcript Information: R_Transcript_48017.p1


Annotated TAIR IDAT5G39510.1
Annotated Gene NameVesicle transport v-SNARE family protein
Annotated Gene Symbol(s)VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1
Annotation TypeOrtholog
Chromosome Positionchr5:15822035-15823591 | Forward length=221
E-Value3.6E-109
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 123.042745035035
Replicate 215.48663293117
Replicate 318.926488864906
Condition 2: 8 Hour
Replicate 121.360009847597
Replicate 224.026053893189
Replicate 325.489495764799
Condition 3: 24 Hour
Replicate 118.561631375591
Replicate 215.32918703033
Replicate 322.5862484535


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48017.p1 GENE.R_Transcript_48017~~R_Transcript_48017.p1 ORF type:5prime_partial len:282 (+),score=44.89,V-SNARE|PF05008.11|4.1e-25,V-SNARE|PF05008.11|7.6e+03,V-SNARE_C|PF12352.4|1.8e+02,V-SNARE_C|PF12352.4|9.5e+03,V-SNARE_C|PF12352.4|3.5e-21,Sec20|PF03908.9|6.1e+02,Sec20|PF03908.9|9.1e-06 R_Transcript_48017:1-846(+)
CTTTACAAGCACAAAAATACTCCAGTCCTGTACAAAGGTCCCTCCCTCAAAGATAAGCACAAAGAAAACTATTTTTTCCGCGTATATTCTCCGGCAAATTTCTCCACTCCAATCTATCATCGCCGTTACGTCATTCCTTCCGATTACCACCCTTCAGATAAAGAAAGTCAAGGTCAAGCGAAGATGAGTGAGGTGTTCGAAGGGTACGAGCGACAATACTGTGAGCTTTCAGCCAATCTTACAAGAAAGTGTACATCTGCCAGTCTTCTTGATGGCGAGCAAAAAAAGCAAAAGGTTTCTGAAATCAAAGCTGGAGTAGATGAAGCAGAATCTCTGATCAGAAAGATGGATCTTGAGGCAAGAAGTTTGCAGCCAAATGTCAAGGCTGTTCTTCTTGTCAAGTTGAGAGAATACAAATCAGATTTGAACAACTTAAAAAGTGAAGTGAAGAGAATCTCGTCTTGTAAGCCAAACCAGGCTTCTCGGGATGAGTTGTTGGAATCAGGGATGGCTGATGCGTTAACAGTATCAGCTGAACAAAGAGCGAGATTGATGATGTCAACAGAAAGACTGAATAAATCTGGTGACAGAATCAGGGAAGGCAGAAGGACAATGCTTGAAACTGAAGAGCTGGGGGTCTCAATTCTTCAAGATCTACACCAACAGCGACAGTCTCTTCTACATGCAAATAACACGCTTCATGGAGTAGATGAAAATGTCGGCAGAAGTAAAAGGATATTGACCAACATGTCGAGGAGGATGAGCAGGAACAAATGGATTATTGGTATTATAATTGCTGTCCTTGTTGTAGCTATCGTCTTGATCCTGTACTTCAAATTCAGATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48017.p1 GENE.R_Transcript_48017~~R_Transcript_48017.p1 ORF type:5prime_partial len:282 (+),score=44.89,V-SNARE|PF05008.11|4.1e-25,V-SNARE|PF05008.11|7.6e+03,V-SNARE_C|PF12352.4|1.8e+02,V-SNARE_C|PF12352.4|9.5e+03,V-SNARE_C|PF12352.4|3.5e-21,Sec20|PF03908.9|6.1e+02,Sec20|PF03908.9|9.1e-06 R_Transcript_48017:1-846(+)
LYKHKNTPVLYKGPSLKDKHKENYFFRVYSPANFSTPIYHRRYVIPSDYHPSDKESQGQAKMSEVFEGYERQYCELSANLTRKCTSASLLDGEQKKQKVSEIKAGVDEAESLIRKMDLEARSLQPNVKAVLLVKLREYKSDLNNLKSEVKRISSCKPNQASRDELLESGMADALTVSAEQRARLMMSTERLNKSGDRIREGRRTMLETEELGVSILQDLHQQRQSLLHANNTLHGVDENVGRSKRILTNMSRRMSRNKWIIGIIIAVLVVAIVLILYFKFR*

Click here to download the sequence:
Link to NCBI Protein BLAST