Transcript Information: R_Transcript_48022.p1


Annotated TAIR IDAT5G39510.1
Annotated Gene NameVesicle transport v-SNARE family protein
Annotated Gene Symbol(s)VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1
Annotation TypeOrtholog
Chromosome Positionchr5:15822035-15823591 | Forward length=221
E-Value4.2E-103
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6205899913068
Replicate 21.1773626401663
Replicate 31.4985716184399
Condition 2: 8 Hour
Replicate 11.7162989449004
Replicate 21.7763317350474
Replicate 32.7990801423961
Condition 3: 24 Hour
Replicate 12.0383099875064
Replicate 21.6489913189217
Replicate 30.40911597545603


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48022.p1 GENE.R_Transcript_48022~~R_Transcript_48022.p1 ORF type:complete len:214 (+),score=46.74,V-SNARE|PF05008.11|2.3e-25,V-SNARE|PF05008.11|8.7e+03,V-SNARE|PF05008.11|5.2e+03,V-SNARE_C|PF12352.4|1.3e+02,V-SNARE_C|PF12352.4|6.7e+03,V-SNARE_C|PF12352.4|2.1e-21 R_Transcript_48022:200-841(+)
ATGAGTGAGGTGTTCGAAGGGTACGAGCGACAATACTGTGAGCTTTCAGCCAATCTTACAAGAAAGTGTACATCTGCCAGTCTTCTTGATGGCGAGCAAAAAAAGCAAAAGGTTTCTGAAATCAAAGCTGGAGTAGATGAAGCAGAATCTCTGATCAGAAAGATGGATCTTGAGGCAAGAAGTTTGCAGCCAAATGTCAAGGCTGTTCTTCTTGTCAAGTTGAGAGAATACAAATCAGATTTGAACAACTTAAAAAGTGAAGTGAAGAGAATCTCGTCTTGTAAGCCAAACCAGGCTTCTCGGGATGAGTTGTTGGAATCAGGGATGGCTGATGCGTTAACAGTATCAGCTGAACAAAGAGCGAGATTGATGATGTCAACAGAAAGACTGAATAAATCTGGTGACAGAATCAGGGAAGGCAGAAGGACAATGCTTGAAACTGAAGAGCTGGGGGTCTCAATTCTTCAAGATCTACACCAACAGCGACAGTCTCTTCTACATGCAAATAACACGCTTCATGGAGTAGATGAAAATGTCGGCAGAAGTAAAAGGATATTGACCAACATGTCGAGGAGGATGAGCAGGAACAAATGGATTATTGTGGATTGCGGTCCCCAGGTGTTTTTTGATCCATGCAGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48022.p1 GENE.R_Transcript_48022~~R_Transcript_48022.p1 ORF type:complete len:214 (+),score=46.74,V-SNARE|PF05008.11|2.3e-25,V-SNARE|PF05008.11|8.7e+03,V-SNARE|PF05008.11|5.2e+03,V-SNARE_C|PF12352.4|1.3e+02,V-SNARE_C|PF12352.4|6.7e+03,V-SNARE_C|PF12352.4|2.1e-21 R_Transcript_48022:200-841(+)
MSEVFEGYERQYCELSANLTRKCTSASLLDGEQKKQKVSEIKAGVDEAESLIRKMDLEARSLQPNVKAVLLVKLREYKSDLNNLKSEVKRISSCKPNQASRDELLESGMADALTVSAEQRARLMMSTERLNKSGDRIREGRRTMLETEELGVSILQDLHQQRQSLLHANNTLHGVDENVGRSKRILTNMSRRMSRNKWIIVDCGPQVFFDPCS*

Click here to download the sequence:
Link to NCBI Protein BLAST