Transcript Information: R_Transcript_48158.p1


Annotated TAIR IDAT5G05800.1
Annotated Gene Nameunknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:1743234-1744751 | Reverse length=449
E-Value6E-10
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3385504700127
Replicate 20.55990134443462
Replicate 30.9162695038461
Condition 2: 8 Hour
Replicate 11.1426736975381
Replicate 20.74536272803952
Replicate 30.48404294987699
Condition 3: 24 Hour
Replicate 10.61220819273878
Replicate 20.58814023708206
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48158.p1 GENE.R_Transcript_48158~~R_Transcript_48158.p1 ORF type:3prime_partial len:150 (+),score=29.57,Myb_DNA-bind_3|PF12776.3|8.4e-18 R_Transcript_48158:65-511(+)
ATGGCACCAAGTCGAAAAAAGAACAAAGATGGAAGTGAAGGAAGTGAGAGCTATGGAGGGGATAGGGTTGCTTGGAAAAGCGAGTTATTTAATCTCCTATGTGATCTTTGTCTTCAATATGTTGAAAAGAGCGAAGGAAAACGTGGTGAGATTATTTCTCAAAGGCTAGCATGGGGAAAGATAGTTGAGAATTTTCAAAAACAAACAAACTTACCATGGGACAAGTCTAAACTTAAGAACAAGTTAGATAATTATAAAGCTACATGGAGTCTTTGGAAACAACTCAAAGGGAGAGAAACGGGACTAGGATGGAGTAGTGAGAAGGGAACAATTGATGCTAGTAAAGAATGGTGGTCCAATAAGATTAAGGAAAATCCCAAATTCAAGGACTTTGAAGAAAAAGGGATTGATCTTGAACTTGAGTCAAAATTGAATTCTATATACCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48158.p1 GENE.R_Transcript_48158~~R_Transcript_48158.p1 ORF type:3prime_partial len:150 (+),score=29.57,Myb_DNA-bind_3|PF12776.3|8.4e-18 R_Transcript_48158:65-511(+)
MAPSRKKNKDGSEGSESYGGDRVAWKSELFNLLCDLCLQYVEKSEGKRGEIISQRLAWGKIVENFQKQTNLPWDKSKLKNKLDNYKATWSLWKQLKGRETGLGWSSEKGTIDASKEWWSNKIKENPKFKDFEEKGIDLELESKLNSIYL

Click here to download the sequence:
Link to NCBI Protein BLAST