Transcript Information: R_Transcript_48195.p1


Annotated TAIR IDAT4G38350.2
Annotated Gene NamePatched family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:17958324-17966846 | Reverse length=1297
E-Value9.4E-227
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 111.199875071245
Replicate 24.1584905678882
Replicate 36.404990706497
Condition 2: 8 Hour
Replicate 19.1762561841132
Replicate 28.249645727816
Replicate 315.613909718119
Condition 3: 24 Hour
Replicate 112.615649408622
Replicate 28.5651490837193
Replicate 313.005121619788


Fold Change




FASTA Sequences

Nucleotide Sequence

>R_Transcript_48195.p1 GENE.R_Transcript_48195~~R_Transcript_48195.p1 ORF type:complete len:515 (+),score=82.56,NPC1_N|PF16414.1|2.1e-66 R_Transcript_48195:397-1941(+)
ATGAAGTCTTTACTGAGATTTTTTCTTGTCCTTCTTGTGATTCAGGTGGGTTCTTTGTGTAGTGCAATAAAAGGTGATCATGGGCCATCTCAATATTCTGATCCCTTACTTGGGCAAAGACATGCTGTGGAATACTGTGCTATGTATGATATCTGTGGAGAGCGTAGTGATGGGAAAGTTTTAAATTGCCCCTACGGTTCTCCTTCAGTGAAGCCTGATGATCTCTTTTCAGCAAAAATACAGAGTTTGTGTCCCACCATTAGTGGTAATGTGTGTTGTACAGAGACCCAGTTTGAGACATTGCGCACACAAGTTCAACAAGCAGTCCCATTGCTGGTTGGTTGTCCAGCTTGCTTGAGGAACTTCCTAAATCTTTTCTGTGAGATGTCTTGCTCACCAAATCAGAGTCTGTTCATTAATGTTACTTCTGTTGCCAAGGTCAATGGCAACTTGACTGTGGATGGTATTGATCTTTTTGTCACAGAAGAATTTGGAGAAGGACTCTATAACTCCTGCAAGGATGTCAAATTTGGAACTATGAATACGAGAGCCATAGATTTTATGGGGGCAGGCGCCAAGAATTATAAAGAATTGTTCGCATTCCTTGGCCAGAAGGCAATACCAGGCTTGCCTGGATCCCCCTATACCATTAATTTCCAGACATTTAGTCCTGAATCATCTGGAATGAATCTTATGAACGTTTCTACATACTCCTGCAATGACACTTCACTAGGTTGCTCATGTGGTGATTGTCCTTCATCTCCTGAGTGCTCGAGCTCAGAACCTCCCCATTCACAGACAAAAGAGTCCTGCTCAGTTACACTGGGATCACTCAAGATAAAATGTGTTGATTTTTCAATGGCCATCTTGTATATTCTACTGCTTTCTGGATTTCTTGGATGGGGGTTCTTTCATCGAGCTGCAGTAAGGAGTGGTCCTTCATCTAGCACAGAACCGTTGTTGAGTAAAGCTAACAATACCAATGAGGAAATTGATGATCACCTTGGGCAAAAGGTTCCTGATTCACTACCTCAAGCCCAGTCTACTATTCAAGGATGTATGACTAATGCTTTTAGGAGATATGGGCTATGGGTTGCAAGAAATCCTACTCTTGTGCTGTGCTCCTCTGTCGGCATTGTTATTGTCCTTTGCTTAGGTTTGCTACGGTTCAAGGTTGAGACTCGACCTGAGAAGTTGTGGGTAGGTCCTGGAAGTAAAGCAGCAGAAGAGAAACACTTTTTTGACAGCCACTTAGCCCCATTTTATAGGATTGAGCAGATTATATTGGCAACCAGGCCAGATTCGCAGAATGAGAAACCTCCCAGTATAGTAACAGAGGATAATATACAGTTACTCTTTGATATACAAGATAAGGTTGATGAACTTTGTGTAGATTATTTTGGATCCATGGTATCTCTAGCTAACATTTGTTTGAAGCCTTTAGGGGAGGATTGTGCCATCCAGAGTATCCTTCAGGTAAAAGCTTCACAGCTCTCTGTAGTTTGCTTCTGGTTTGAGCAACAAAACCTTGTTGACCCTAAGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>R_Transcript_48195.p1 GENE.R_Transcript_48195~~R_Transcript_48195.p1 ORF type:complete len:515 (+),score=82.56,NPC1_N|PF16414.1|2.1e-66 R_Transcript_48195:397-1941(+)
MKSLLRFFLVLLVIQVGSLCSAIKGDHGPSQYSDPLLGQRHAVEYCAMYDICGERSDGKVLNCPYGSPSVKPDDLFSAKIQSLCPTISGNVCCTETQFETLRTQVQQAVPLLVGCPACLRNFLNLFCEMSCSPNQSLFINVTSVAKVNGNLTVDGIDLFVTEEFGEGLYNSCKDVKFGTMNTRAIDFMGAGAKNYKELFAFLGQKAIPGLPGSPYTINFQTFSPESSGMNLMNVSTYSCNDTSLGCSCGDCPSSPECSSSEPPHSQTKESCSVTLGSLKIKCVDFSMAILYILLLSGFLGWGFFHRAAVRSGPSSSTEPLLSKANNTNEEIDDHLGQKVPDSLPQAQSTIQGCMTNAFRRYGLWVARNPTLVLCSSVGIVIVLCLGLLRFKVETRPEKLWVGPGSKAAEEKHFFDSHLAPFYRIEQIILATRPDSQNEKPPSIVTEDNIQLLFDIQDKVDELCVDYFGSMVSLANICLKPLGEDCAIQSILQVKASQLSVVCFWFEQQNLVDPK*

Click here to download the sequence:
Link to NCBI Protein BLAST